Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PspR76_RS29785 Genome accession   NZ_CP019428
Coordinates   6546583..6546876 (+) Length   97 a.a.
NCBI ID   WP_257792545.1    Uniprot ID   -
Organism   Pseudomonas sp. R76     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6541583..6551876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR76_RS29760 (PspR76_30285) glnK 6542248..6542586 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PspR76_RS29765 (PspR76_30290) - 6543009..6543272 (+) 264 WP_071488052.1 accessory factor UbiK family protein -
  PspR76_RS29770 (PspR76_30295) - 6543645..6544163 (+) 519 WP_159960930.1 Bro-N domain-containing protein -
  PspR76_RS29775 - 6544525..6544698 (+) 174 WP_158235252.1 hypothetical protein -
  PspR76_RS29780 (PspR76_30300) - 6544999..6546351 (+) 1353 WP_257792569.1 anti-phage dCTP deaminase -
  PspR76_RS29785 (PspR76_30305) comM 6546583..6546876 (+) 294 WP_257792545.1 magnesium chelatase domain-containing protein Machinery gene
  PspR76_RS29790 (PspR76_30310) - 6547345..6548589 (+) 1245 WP_159960932.1 site-specific integrase -
  PspR76_RS29795 - 6548573..6550297 (+) 1725 WP_159960934.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10288.93 Da        Isoelectric Point: 10.0914

>NTDB_id=215703 PspR76_RS29785 WP_257792545.1 6546583..6546876(+) (comM) [Pseudomonas sp. R76]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGY
RLVIGMANAHISSTYGR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=215703 PspR76_RS29785 WP_257792545.1 6546583..6546876(+) (comM) [Pseudomonas sp. R76]
ATGTCTCTCGCCATCGTCCACAGCCGCGCCCAAATTGGCGTCGAAGCCCCTGCCGTCACTGTTGAAGTGCATATGGCCAA
TGGTCTGCCGTCCCTGACATTGGTGGGCCTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAACTCTGCGCTGCAATACCCGGCACGCCGTATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGATGGCGGGTAC
AGATTAGTTATAGGTATGGCCAACGCACACATAAGTAGCACCTATGGACGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

74.684

81.443

0.608
  comM Vibrio cholerae strain A1552

74.684

81.443

0.608
  comM Glaesserella parasuis strain SC1401

72.152

81.443

0.588
  comM Haemophilus influenzae Rd KW20

69.62

81.443

0.567
  comM Legionella pneumophila str. Paris

62.069

89.691

0.557
  comM Legionella pneumophila strain ERS1305867

62.069

89.691

0.557
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.86

88.66

0.371

Multiple sequence alignment