Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PspS04_RS26670 Genome accession   NZ_CP019427
Coordinates   5926950..5928443 (+) Length   497 a.a.
NCBI ID   WP_159998564.1    Uniprot ID   -
Organism   Pseudomonas sp. S04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5921950..5933443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS04_RS26640 (PspS04_27250) - 5922323..5923027 (+) 705 WP_159998560.1 HAD family hydrolase -
  PspS04_RS26645 (PspS04_27255) sutA 5923235..5923561 (-) 327 WP_095164825.1 transcriptional regulator SutA -
  PspS04_RS26650 (PspS04_27260) - 5923664..5924089 (-) 426 WP_095164827.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PspS04_RS26655 (PspS04_27265) - 5924305..5925642 (-) 1338 WP_095164829.1 ammonium transporter -
  PspS04_RS26660 (PspS04_27270) glnK 5925678..5926016 (-) 339 WP_095164831.1 P-II family nitrogen regulator -
  PspS04_RS26665 (PspS04_27275) - 5926430..5926690 (+) 261 WP_159998562.1 accessory factor UbiK family protein -
  PspS04_RS26670 (PspS04_27280) comM 5926950..5928443 (+) 1494 WP_159998564.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PspS04_RS26675 (PspS04_27285) - 5928457..5929377 (-) 921 WP_095164837.1 LysR substrate-binding domain-containing protein -
  PspS04_RS26680 (PspS04_27290) - 5929536..5930933 (+) 1398 WP_095165196.1 NorM family multidrug efflux MATE transporter -
  PspS04_RS26685 (PspS04_27295) - 5930952..5932625 (-) 1674 WP_159998566.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53319.24 Da        Isoelectric Point: 8.1042

>NTDB_id=215679 PspS04_RS26670 WP_159998564.1 5926950..5928443(+) (comM) [Pseudomonas sp. S04]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGEVRAVRGVLPAALAARQAGRALVVPWANAEEACLASGLKVLAVHHL
LEAVAHFNGHTPIEPYRSNGLLHASKPYPDLSEVQGQAAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLTE
SEALEVAAIQSVASGVPLSHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GYIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTTEMVQRYRHKLSGPLLDRIDLHLTVARETTALNPATQP
GDNSARAAERVAMAREVQQQRQGCANAFLDLPGLRRHCQLSTVDERWLESACERLTLSLRAAHRLLKVSRTLADLEQAQG
ISREHLAEALHYRPANQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=215679 PspS04_RS26670 WP_159998564.1 5926950..5928443(+) (comM) [Pseudomonas sp. S04]
ATGTCCCTGTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGAGGCACCGGCTGTCACTGTCGAAGTCCACCTGGCCAA
TGGCTTGCCATCACTGACGATGGTCGGCTTGCCCGAAGCGGCGGTGAAAGAGAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCGGGCCTGCAGTTTCCAGCGCGGCGCATCACCTTGAATCTCGCTCCCGCCGACTTGCCCAAGGACGGTGGGCGC
TTTGACCTGGCGATTGCCCTGGGGATTCTTTCGGCCAGCGTGCAGGTGCCAACCCTGACCCTGGATGACGTGGAGTGCCT
GGGGGAACTGGCGCTTTCCGGTGAGGTGCGGGCGGTTCGCGGCGTGTTACCGGCCGCCTTGGCGGCGCGCCAGGCCGGGC
GGGCGCTGGTGGTGCCCTGGGCGAATGCCGAGGAAGCTTGCCTGGCCTCCGGGCTCAAGGTGCTCGCGGTGCATCATTTG
CTGGAAGCGGTCGCTCACTTCAACGGCCATACCCCCATCGAGCCTTACCGCTCCAACGGTTTGCTCCATGCCAGCAAGCC
CTACCCCGACTTGAGCGAAGTACAAGGCCAGGCCGCCGCCAAGCGGGCCCTGCTGATAGCCGCGGCGGGCGCCCATAACC
TACTGTTCAGCGGGCCACCCGGGACCGGGAAAACCCTGCTGGCCAGTCGCTTGCCCGGATTACTGCCACCGCTGACGGAA
AGTGAGGCCCTGGAGGTGGCGGCGATCCAGTCGGTCGCCAGCGGTGTGCCGTTGAGTCATTGGCCGCAACGTCCTTTCCG
CCAGCCCCATCACTCGGCGTCCGGCCCGGCGCTGGTAGGCGGCAGTTCAAAACCCCAGCCCGGGGAAATCACCCTCGCCC
ACCACGGCGTGCTGTTTCTCGACGAGCTGCCGGAGTTCGATCGCAAGGTGCTGGAGGTATTACGAGAGCCGCTGGAATCT
GGCTATATCGTGATTTCCCGCGCCCGGGACCGAGTGCGTTTCCCGGCGCGTTTCCAACTGGTGGCGGCCATGAATCCCTG
CCCCTGTGGCTACCTGGGCGAGCCCAGCGGTCGCTGCTCCTGCACCACGGAGATGGTCCAGCGTTACCGGCACAAGCTCT
CCGGCCCGTTGCTCGACCGCATCGACCTGCACCTGACCGTCGCCCGCGAGACCACTGCACTCAATCCCGCCACCCAGCCG
GGCGACAACTCCGCCCGTGCTGCCGAGCGCGTTGCCATGGCTCGCGAGGTTCAGCAGCAGCGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGCCGGGGCTGCGCCGGCATTGCCAGTTGTCCACAGTGGACGAGCGCTGGCTGGAAAGCGCCTGCGAAC
GCCTGACCCTGTCGCTCAGGGCGGCCCATCGACTACTCAAGGTCTCCCGGACCCTGGCCGATCTCGAACAGGCGCAGGGC
ATCAGCCGCGAACACCTGGCTGAAGCACTGCACTATCGGCCGGCCAATCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.309

100

0.545
  comM Vibrio campbellii strain DS40M4

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

53.507

100

0.537
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.6

100

0.469

Multiple sequence alignment