Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PspS04_RS08010 Genome accession   NZ_CP019427
Coordinates   1812601..1813236 (+) Length   211 a.a.
NCBI ID   WP_162530197.1    Uniprot ID   A0A7X1GH78
Organism   Pseudomonas sp. S04     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1807601..1818236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS04_RS07990 (PspS04_08175) - 1807840..1808772 (+) 933 WP_095167609.1 ABC transporter ATP-binding protein -
  PspS04_RS07995 (PspS04_08180) - 1808769..1809548 (+) 780 WP_095167610.1 ABC transporter permease -
  PspS04_RS08000 (PspS04_08185) - 1809598..1810119 (-) 522 WP_095167612.1 DUF2062 domain-containing protein -
  PspS04_RS08005 (PspS04_08190) comA 1810255..1812495 (+) 2241 WP_159994490.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PspS04_RS08010 (PspS04_08195) exbB 1812601..1813236 (+) 636 WP_162530197.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PspS04_RS08015 (PspS04_08200) - 1813233..1813661 (+) 429 WP_095167615.1 biopolymer transporter ExbD -
  PspS04_RS08020 (PspS04_08205) lpxK 1813661..1814671 (+) 1011 WP_095167617.1 tetraacyldisaccharide 4'-kinase -
  PspS04_RS08025 (PspS04_08210) - 1814696..1814881 (+) 186 WP_095167619.1 Trm112 family protein -
  PspS04_RS08030 (PspS04_08215) kdsB 1814878..1815642 (+) 765 WP_095167621.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PspS04_RS08035 (PspS04_08220) - 1815642..1816106 (+) 465 WP_159994492.1 low molecular weight protein-tyrosine-phosphatase -
  PspS04_RS08040 (PspS04_08225) murB 1816103..1817122 (+) 1020 WP_159994494.1 UDP-N-acetylmuramate dehydrogenase -
  PspS04_RS08045 (PspS04_08230) - 1817362..1817832 (+) 471 WP_095167626.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22957.11 Da        Isoelectric Point: 6.8770

>NTDB_id=215664 PspS04_RS08010 WP_162530197.1 1812601..1813236(+) (exbB) [Pseudomonas sp. S04]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=215664 PspS04_RS08010 WP_162530197.1 1812601..1813236(+) (exbB) [Pseudomonas sp. S04]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCGATCGCTGCATTGGGCATTGTTGC
CGAGCGCCTGTGGACCCTGCGGGCCAGCCGTGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCTGCCGCCCGGGTCATTCATGAGCTGGAGCGCTATAT
CAATGCACTCGGTACCATTGCGGCCATGGCGCCATTACTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGGGGGATTTCCAAGGCCCTGATCACCACGGCC
GCGGGCCTGATGGTGGGGATTCCGTCGGTGTTCTTCCACCGGTTCCTGCAACGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGACCTGACCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1GH78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment