Detailed information NTG0215487

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: CV725_RS07175
• Genome accession: NZ_CP024951
• Coordinates: 1463140..1464348 (+)
• Length: 402 a.a.
• NCBI ID: WP_000814183.1
• Uniprot ID: -
• Organism: Helicobacter pylori B128
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1458140..1469348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV725_RS08515 (CV725_07175)	-	1460222..1460362 (+)	141	WP_000789929.1	hypothetical protein	-
CV725_RS07165 (CV725_07180)	-	1460355..1461491 (+)	1137	WP_000067692.1	VirB8/TrbF family protein	-
CV725_RS07170 (CV725_07185)	-	1461488..1463143 (+)	1656	WP_000617227.1	TrbG/VirB9 family P-type conjugative transfer protein	-
CV725_RS07175 (CV725_07190)	comB10	1463140..1464348 (+)	1209	WP_000814183.1	DNA type IV secretion system protein ComB10	Machinery gene
CV725_RS07180 (CV725_07195)	-	1464332..1466572 (+)	2241	WP_000730437.1	collagen-like protein	-
CV725_RS07185 (CV725_07200)	-	1466585..1467547 (+)	963	WP_001095495.1	hypothetical protein	-
CV725_RS07190 (CV725_07205)	-	1467564..1467839 (+)	276	WP_001278752.1	hypothetical protein	-
CV725_RS07195 (CV725_07210)	-	1467844..1468788 (+)	945	WP_000362464.1	CpaF/VirB11 family protein	-
CV725_RS07200 (CV725_07215)	-	1468785..1469303 (+)	519	WP_000760576.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 44988.57 Da
• Isoelectric Point: 10.0507

>NTDB_id=215487 CV725_RS07175 WP_000814183.1 1463140..1464348(+) (comB10) [Helicobacter pylori B128]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPDTEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEILAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=215487 CV725_RS07175 WP_000814183.1 1463140..1464348(+) (comB10) [Helicobacter pylori B128]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGATACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
TTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGATTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.43	97.264	0.51