Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PspS34_RS27400 Genome accession   NZ_CP019398
Coordinates   6083124..6084617 (+) Length   497 a.a.
NCBI ID   WP_154860904.1    Uniprot ID   -
Organism   Pseudomonas sp. S34     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6078124..6089617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS34_RS27375 (PspS34_27845) - 6078700..6080037 (-) 1338 WP_154860906.1 ammonium transporter -
  PspS34_RS27380 (PspS34_27850) glnK 6080073..6080411 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PspS34_RS27385 (PspS34_27855) - 6080833..6081093 (+) 261 WP_008015521.1 accessory factor UbiK family protein -
  PspS34_RS27390 (PspS34_27860) - 6081555..6082001 (+) 447 WP_159390372.1 hypothetical protein -
  PspS34_RS27395 (PspS34_27865) - 6082103..6082903 (+) 801 WP_223509027.1 hypothetical protein -
  PspS34_RS27400 (PspS34_27870) comM 6083124..6084617 (+) 1494 WP_154860904.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PspS34_RS27405 (PspS34_27875) - 6084624..6085835 (-) 1212 WP_154860903.1 aldose 1-epimerase family protein -
  PspS34_RS27410 (PspS34_27880) - 6086103..6087491 (+) 1389 WP_154860902.1 SrfA family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53161.34 Da        Isoelectric Point: 7.8712

>NTDB_id=215197 PspS34_RS27400 WP_154860904.1 6083124..6084617(+) (comM) [Pseudomonas sp. S34]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDAECLGELALSGAVRAVRGVLPAALAARKAGRWLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPIEPYVSNGLLYASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVVSCSPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAELVADARERQQKRQGCANAFLDLPGLRRHCKLSTVDETWLETACERLTLSLRAAHRLLKVARTLADLEQVDG
ITREHLAEALQYRPATL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=215197 PspS34_RS27400 WP_154860904.1 6083124..6084617(+) (comM) [Pseudomonas sp. S34]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCGCCCGCTGTCACCGTTGAAGTCCACCTGGCCAA
TGGTTTGCCGTCGCTGACGATGGTCGGCCTGCCCGAGGCGGCGGTAAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGCAATTTCCGGCGCGGCGGATCACGTTGAATCTGGCGCCGGCGGATTTACCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCCCTGGGGATTCTCTCGGCCAGTGTGCAGGTGCCTACGTTGACGCTCGATGATGCGGAATGCCT
TGGGGAGTTGGCGTTATCAGGTGCCGTGCGGGCGGTTCGTGGGGTCTTGCCAGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCTGGTTGATGGTGCCGCGAGCTAACGCTGAAGAGGCGTGCCTGGCCTCGGGACTGAAAGTAATTGCGGTGGATCATCTG
CTTGAGGCCGTTGCGCACTTCAATGGGCATACACCGATTGAGCCTTATGTCTCCAATGGCCTGCTCTACGCCAGCAAACC
CTACCCCGACTTGAATGAAGTGCAGGGGCAACTCGCGGCCAAGCGTGCGCTGCTGATCGCTGCCGCTGGTGCTCACAACC
TGTTGTTCAGCGGGCCGCCGGGAACGGGGAAAACCCTGTTGGCGAGCCGCTTGCCGGGATTGCTGCCGCCGCTGGCCGAA
AATGAAGCGCTGGAAGTGGCGGCGATTCAGTCGGTCGTCAGTTGCTCGCCGTTGAGCCATTGGCCGCAGCGGCCGTTTCG
CCAACCGCATCACTCGGCGTCCGGCCCCGCGCTGGTGGGGGGCGGCTCGAAACCGCAGCCCGGCGAAATCACCCTCGCCC
ATCACGGCGTCCTGTTTCTGGACGAACTACCGGAGTTTGATCGCAAGGTTTTGGAGGTGCTCCGGGAGCCACTGGAATCC
GGCCACATCGTGATCTCTCGTGCCAAGGACCGCGTACGCTTCCCGGCGCGCTTTCAACTGGTCGCAGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAGCCGAGCGGCCGTTGCTCCTGTACGCCGGACATGGTTCAGCGCTATCGCAACAAATTGT
CGGGGCCGCTGCTGGATCGTATCGATCTGCACCTTACCGTTGCTCGCGAAGCCACGGCACTGAATCCTGCGTTGAAACCC
GGCGACGATACTGCCACCGCCGCCGAGTTGGTTGCCGATGCAAGAGAACGGCAACAAAAGCGCCAAGGCTGTGCCAATGC
ATTCCTCGATTTGCCGGGCCTGCGCAGACACTGCAAGTTATCCACAGTTGACGAAACCTGGCTGGAAACGGCGTGTGAAC
GGCTGACCTTGTCGCTGCGAGCGGCCCATCGACTGCTCAAGGTTGCTCGCACCTTGGCGGACCTTGAGCAAGTCGATGGC
ATCACCCGTGAACACTTGGCCGAGGCTCTGCAATATCGGCCGGCAACACTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Haemophilus influenzae Rd KW20

53.908

100

0.541
  comM Glaesserella parasuis strain SC1401

53.2

100

0.535
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.8

100

0.461

Multiple sequence alignment