Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PspR32_RS25350 Genome accession   NZ_CP019396
Coordinates   5482253..5483746 (+) Length   497 a.a.
NCBI ID   WP_036994859.1    Uniprot ID   A0AAP0XG72
Organism   Pseudomonas sp. R32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5477253..5488746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR32_RS25320 (PspR32_25345) - 5477802..5478497 (+) 696 WP_036994874.1 HAD-IA family hydrolase -
  PspR32_RS25325 (PspR32_25350) sutA 5478554..5478877 (-) 324 WP_010221119.1 transcriptional regulator SutA -
  PspR32_RS25330 (PspR32_25355) - 5479341..5480672 (-) 1332 WP_036994872.1 ammonium transporter -
  PspR32_RS25335 (PspR32_25360) glnK 5480716..5481054 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PspR32_RS25340 (PspR32_25365) - 5481384..5481647 (+) 264 WP_010221117.1 accessory factor UbiK family protein -
  PspR32_RS25345 (PspR32_25370) - 5481655..5482008 (+) 354 WP_036994870.1 gamma-glutamylcyclotransferase family protein -
  PspR32_RS25350 (PspR32_25375) comM 5482253..5483746 (+) 1494 WP_036994859.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PspR32_RS25355 (PspR32_25380) - 5483802..5485232 (+) 1431 WP_036994857.1 mechanosensitive ion channel family protein -
  PspR32_RS25360 (PspR32_25385) - 5485236..5486522 (-) 1287 WP_036994855.1 FAD-binding oxidoreductase -
  PspR32_RS25365 (PspR32_25390) - 5486642..5488132 (-) 1491 WP_159389323.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52901.63 Da        Isoelectric Point: 7.3467

>NTDB_id=215148 PspR32_RS25350 WP_036994859.1 5482253..5483746(+) (comM) [Pseudomonas sp. R32]
MSLALVHSRAQVGVSAPAVSVEAHLANGLPALTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQFPIAALGEVECLGELALSGAIRSVQGVLPAALAAREAGRALVVPQENAEEACLASGLVVFAVSHL
LELVAHFNGQTPLNPYAANGLLLQIRPYPDLNEVQGQQAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVASHVPLSSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVAREATALSPNSRH
GESSATIAAQVAAARDIQQQRQGCANAFLDLPGLRQYCGLSTADQTWLESACERLTLSLRAAHRLLKVARTLADLEQVES
IGREHLAEALHYRPSNQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=215148 PspR32_RS25350 WP_036994859.1 5482253..5483746(+) (comM) [Pseudomonas sp. R32]
ATGTCCCTCGCCCTTGTCCACAGCCGTGCCCAGGTCGGTGTTTCGGCCCCGGCAGTCAGTGTTGAAGCGCATCTGGCCAA
TGGTTTGCCGGCGCTGACCCTGGTTGGCCTGCCGGAAGCGACCGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCC
TCAATTCCGGCCTGGAATTCCCCGCCCGGCGCATTACTCTCAACCTCGCGCCAGCCGACTTGCCCAAGGATGGCGGACGC
TTCGACCTTGCAATTGCCCTGGGGATTCTCGCCGCCAACGGCCAATTCCCGATTGCAGCGCTTGGCGAAGTGGAGTGCCT
GGGTGAACTGGCGCTGTCCGGAGCGATCCGCTCGGTTCAAGGCGTATTACCCGCCGCATTGGCCGCACGGGAAGCCGGCC
GAGCCCTGGTGGTACCGCAGGAAAATGCCGAGGAAGCCTGCCTGGCATCGGGGCTGGTGGTGTTCGCAGTCAGCCATCTG
TTGGAACTGGTCGCCCACTTCAACGGCCAGACCCCGCTCAACCCTTACGCTGCCAACGGTTTGCTGCTGCAGATTCGCCC
CTACCCCGACCTCAACGAAGTGCAAGGCCAGCAAGCCGCCAAGCGCGCGCTACTGGTTGCCGCCGCAGGCGCACACAACC
TGCTGTTCAGCGGCCCTCCCGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGTTGCCACCGCTGGATGAA
CGCGAGGCACTGGAGGTGGCAGCGATCCAGTCGGTGGCCAGCCATGTACCACTGAGCAGCTGGCCGCAGCGTCCGTTTCG
TCATCCGCATCACTCGGCCTCCGGTGCTGCGCTGGTCGGCGGTGGCAGCCGACCGCAGCCCGGGGAAATCACCCTGGCCC
ACCACGGCGTGCTGTTTCTCGATGAGCTGCCAGAGTTCGAGCGGCGGGTACTGGAAGTGCTGCGCGAACCGCTGGAATCC
GGCGAAATCGTCATCGCCCGGGCCAAGGACAAGATCCGCTTTCCGGCGCGCTTCCAGCTGGTCGCCGCCATGAACCCCTG
CCCCTGTGGATATCTTGGCGACCCCACTGGCCGTTGCCGCTGCAGCAGCGAACAGATCCAGCGCTACCGCAACAAACTCT
CCGGCCCCTTGCTCGACCGTATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACGGCACTCTCCCCCAACAGCCGCCAC
GGCGAAAGCAGCGCCACCATTGCCGCGCAAGTCGCCGCCGCCCGCGACATCCAGCAACAACGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGCCCGGCCTGCGCCAGTACTGCGGGTTATCCACAGCCGACCAGACCTGGCTGGAAAGCGCCTGCGAAC
GCCTGACCCTGTCGCTGCGCGCCGCCCACCGTCTGCTCAAGGTGGCGCGCACTTTGGCTGACCTGGAACAGGTGGAAAGC
ATTGGCCGCGAGCATCTGGCTGAAGCGCTGCACTATCGCCCCAGCAACCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.598

0.559
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.291

100

0.547
  comM Glaesserella parasuis strain SC1401

53.693

100

0.541
  comM Legionella pneumophila str. Paris

49.597

99.799

0.495
  comM Legionella pneumophila strain ERS1305867

49.597

99.799

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.473

Multiple sequence alignment