Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BWZ32_RS01500 Genome accession   NZ_CP019320
Coordinates   298689..300212 (-) Length   507 a.a.
NCBI ID   WP_101956569.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2014DJH     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 293689..305212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWZ32_RS01480 (BWZ32_01485) - 294974..295960 (+) 987 WP_101956567.1 serine/threonine protein kinase -
  BWZ32_RS01485 (BWZ32_01490) - 295993..296598 (+) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  BWZ32_RS01490 (BWZ32_01495) - 296652..297533 (-) 882 WP_011079069.1 acyltransferase -
  BWZ32_RS01495 (BWZ32_01500) - 297676..298650 (+) 975 WP_101956568.1 DUF2860 domain-containing protein -
  BWZ32_RS01500 (BWZ32_01505) comM 298689..300212 (-) 1524 WP_101956569.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BWZ32_RS01505 (BWZ32_01510) ilvG 300681..302327 (+) 1647 WP_011151435.1 acetolactate synthase 2 catalytic subunit -
  BWZ32_RS01510 (BWZ32_01515) ilvM 302339..302623 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  BWZ32_RS01515 (BWZ32_01520) ilvE 302635..303573 (+) 939 WP_101956570.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54759.94 Da        Isoelectric Point: 8.7933

>NTDB_id=214818 BWZ32_RS01500 WP_101956569.1 298689..300212(-) (comM) [Vibrio vulnificus strain VV2014DJH]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNIHKSACSL
IEVCAYLCGQQALALHQAPQREKPAQHHRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVAQARELMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=214818 BWZ32_RS01500 WP_101956569.1 298689..300212(-) (comM) [Vibrio vulnificus strain VV2014DJH]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTCCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAGCAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTGCTGCCAGCAGCGCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCTAATGGGGATCAAGCCGCCTTGGTGGGCAAGAACATACATAAATCAGCGTGCTCGTTG
ATTGAAGTTTGTGCTTACTTATGTGGTCAGCAAGCGTTGGCTTTGCATCAGGCGCCTCAGCGAGAAAAACCCGCGCAACA
TCATCGTGATTTACAAGACATCATAGGCCAGCAGCAAGGTAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTAGGGCCTCCTGGGACCGGAAAAACCATGCTGGCGTCACGTTTGCGAGATCTGCTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGTTGGTGGGCGGTGGAACCATTCCGCGTCCTGGAGAAATCTCACTCG
CACACAACGGCTTACTATTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCAACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTTTTGGATCGTTTTGATATGTCACTCGAAATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGTGACCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGCGCAGGCGAGAGAGCTTATGCAGCATCGCAATGGTAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACTGCGTTGCACC
GTTTGGGGTTATCGATTCGCGCTTATCACCGCATCATTAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

64.892

100

0.649
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.4

98.619

0.497
  comM Legionella pneumophila strain ERS1305867

50.4

98.619

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment