Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FORC53_RS16035 Genome accession   NZ_CP019290
Coordinates   3232063..3233586 (-) Length   507 a.a.
NCBI ID   WP_045623569.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_053     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3227063..3238586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS16015 (FORC53_2936) - 3228348..3229334 (+) 987 WP_039555028.1 serine/threonine protein kinase -
  FORC53_RS16020 (FORC53_2937) - 3229367..3229972 (+) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  FORC53_RS16025 (FORC53_2938) - 3230026..3230907 (-) 882 WP_045598829.1 acyltransferase -
  FORC53_RS16030 (FORC53_2939) - 3231050..3232024 (+) 975 WP_118894054.1 DUF2860 domain-containing protein -
  FORC53_RS16035 (FORC53_2940) comM 3232063..3233586 (-) 1524 WP_045623569.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FORC53_RS16040 (FORC53_2941) ilvG 3234056..3235702 (+) 1647 WP_011079066.1 acetolactate synthase 2 catalytic subunit -
  FORC53_RS16045 (FORC53_2942) ilvM 3235714..3235998 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  FORC53_RS16050 (FORC53_2943) ilvE 3236010..3236948 (+) 939 WP_011079064.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54695.82 Da        Isoelectric Point: 9.1030

>NTDB_id=214610 FORC53_RS16035 WP_045623569.1 3232063..3233586(-) (comM) [Vibrio vulnificus strain FORC_053]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKARVAQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=214610 FORC53_RS16035 WP_045623569.1 3232063..3233586(-) (comM) [Vibrio vulnificus strain FORC_053]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTCGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAACTTTCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAACAACATGAATTTGT
CGGTGAATTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTGCTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGTAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGCCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTGGGGCCCCCAGGGACGGGTAAAACCATGCTGGCGTCACGTTTGCGAGATCTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCTGGAGAAATCTCACTCG
CACACAACGGCTTACTGTTTTTGGACGAGATGCCGGAATTTGAGCGCAAAGTGCTCGACTCAATGCGTGAACCGCTAGAG
TCAGGGGAAATCATCATTTCACGAGCGCAGGGTAAAACCCGTTTTCCTGCTCGCTTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGACCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGCGCAGGCGAGAGAGCGAATGCAGCATCGTAATGGCAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATTATCAAAGTGGCGCGAACCATTGCTGATTTAGAAGGCGCACCTCAG
ATCACGCGTGCGCATTTGGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.968

100

0.88
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.846

99.803

0.627
  comM Legionella pneumophila str. Paris

50.202

97.83

0.491
  comM Legionella pneumophila strain ERS1305867

50.202

97.83

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment