Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FORC53_RS11495 Genome accession   NZ_CP019290
Coordinates   2285208..2285510 (-) Length   100 a.a.
NCBI ID   WP_013572179.1    Uniprot ID   A0AAN1PPQ8
Organism   Vibrio vulnificus strain FORC_053     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2280208..2290510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS11470 (FORC53_2066) - 2280751..2281965 (+) 1215 WP_011080966.1 pyridoxal phosphate-dependent aminotransferase -
  FORC53_RS11475 (FORC53_2067) yfbR 2282082..2282630 (+) 549 WP_231846899.1 5'-deoxynucleotidase -
  FORC53_RS11480 (FORC53_2068) - 2282636..2283967 (+) 1332 WP_198434247.1 anti-phage deoxyguanosine triphosphatase -
  FORC53_RS11485 (FORC53_2069) - 2283989..2284597 (-) 609 WP_013572177.1 tRNA-uridine aminocarboxypropyltransferase -
  FORC53_RS11490 (FORC53_2070) rrtA 2284577..2285161 (+) 585 WP_118893875.1 rhombosortase -
  FORC53_RS11495 (FORC53_2071) comEA 2285208..2285510 (-) 303 WP_013572179.1 ComEA family DNA-binding protein Machinery gene
  FORC53_RS11500 (FORC53_2072) ppiD 2285643..2287502 (-) 1860 WP_118893876.1 peptidylprolyl isomerase -
  FORC53_RS11505 (FORC53_2073) - 2287679..2287951 (-) 273 WP_013572181.1 HU family DNA-binding protein -
  FORC53_RS11510 (FORC53_2074) lon 2288144..2290495 (-) 2352 WP_011078147.1 endopeptidase La -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10900.72 Da        Isoelectric Point: 9.6573

>NTDB_id=214601 FORC53_RS11495 WP_013572179.1 2285208..2285510(-) (comEA) [Vibrio vulnificus strain FORC_053]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=214601 FORC53_RS11495 WP_013572179.1 2285208..2285510(-) (comEA) [Vibrio vulnificus strain FORC_053]
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCTGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36

Multiple sequence alignment