Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MCA_RS10460 Genome accession   NC_002977
Coordinates   2301504..2303021 (+) Length   505 a.a.
NCBI ID   WP_041361217.1    Uniprot ID   -
Organism   Methylococcus capsulatus str. Bath     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2296504..2308021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCA_RS10425 (MCA2132) - 2296643..2297725 (-) 1083 WP_010961371.1 efflux RND transporter periplasmic adaptor subunit -
  MCA_RS10430 (MCA2133) grxC 2297773..2298036 (-) 264 WP_010961372.1 glutaredoxin 3 -
  MCA_RS10435 - 2298188..2298406 (+) 219 WP_026046091.1 YgaP family membrane protein -
  MCA_RS10440 (MCA2134) trxC 2298409..2298828 (+) 420 WP_010961373.1 thioredoxin TrxC -
  MCA_RS10445 (MCA2136) - 2299172..2300614 (-) 1443 WP_010961375.1 ammonium transporter -
  MCA_RS10450 (MCA2137) glnK 2300645..2300983 (-) 339 WP_010961376.1 P-II family nitrogen regulator -
  MCA_RS10455 (MCA2138) - 2301244..2301495 (+) 252 WP_010961377.1 accessory factor UbiK family protein -
  MCA_RS10460 (MCA2139) comM 2301504..2303021 (+) 1518 WP_041361217.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MCA_RS10465 (MCA2140) rep 2303018..2305021 (+) 2004 WP_010961379.1 DNA helicase Rep -
  MCA_RS15745 - 2305453..2305746 (+) 294 Protein_2093 IS3 family transposase -
  MCA_RS10485 - 2306060..2306320 (-) 261 WP_017366414.1 hypothetical protein -
  MCA_RS10490 (MCA2144) - 2306347..2306856 (-) 510 WP_010961381.1 lipoprotein -
  MCA_RS10495 (MCA2145) - 2306846..2307610 (-) 765 WP_010961382.1 glycine zipper 2TM domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54216.18 Da        Isoelectric Point: 7.3154

>NTDB_id=21452 MCA_RS10460 WP_041361217.1 2301504..2303021(+) (comM) [Methylococcus capsulatus str. Bath]
MALAIVHSRACQGIDAPEVTVEVHIAPGLPNLTIVGLPETAVRESKDRVRSALITTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQIRTEHLLALECVGELALTGELRPVPGALPVALQSRRAERSLIVPWDNAGEAALVSGACVLPARHL
LDVCAHLDGSRPLAAAEPCTETSQASEEFPDLAEVRGQFQVKRALEIAAAGRHNLLMLGPPGTGKSMLASRMPGILPDLT
ETEALETAAVASVSGMPFDPAVWRRPPYRAPHHIASAPALVGGGSSPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGTITISRATQRLDFPARFQLVAAMNPCPCGYLGDASGRCHCSAEQVARYRARISGPLLDRIDIHIDVPRQDPATLMDG
ASPSEETSVQVRSRVTAARERALRRSGQPNALLTPRQVERHCAPDSAGRALLERAMTRLNLSHRAYHRILKLARTIADLD
GSEAITATHIGEAIGYRRLDRAATR

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=21452 MCA_RS10460 WP_041361217.1 2301504..2303021(+) (comM) [Methylococcus capsulatus str. Bath]
ATGGCGCTCGCGATCGTCCACAGCCGGGCCTGCCAGGGCATCGACGCACCGGAGGTGACGGTGGAAGTCCACATCGCTCC
GGGGCTGCCCAATCTCACCATCGTGGGACTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGGGTGCGCAGCGCTCTCA
TCACCACCGGCTTCGAATTTCCCGCCCAACGCATCACCGTCAATCTGGCCCCGGCCGACCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCCATCGCCCTCGGCATACTGGCCGCTTCCAAGCAGATCCGTACCGAGCATCTGCTGGCGCTGGAGTGTGT
CGGCGAGCTGGCACTTACCGGTGAACTGCGTCCGGTCCCCGGAGCCTTGCCCGTCGCCCTCCAGTCGCGCCGTGCCGAGC
GCAGCCTGATCGTACCCTGGGACAATGCCGGCGAAGCGGCGCTGGTCTCCGGCGCCTGCGTGCTCCCGGCGCGCCATCTG
CTGGACGTGTGCGCCCATCTGGACGGCAGCCGCCCGCTCGCCGCCGCCGAACCGTGCACCGAAACGTCTCAGGCAAGCGA
GGAATTCCCCGATCTCGCCGAAGTCCGCGGCCAGTTCCAGGTCAAGCGCGCCCTGGAGATCGCCGCCGCCGGCCGCCACA
ACCTGCTGATGCTGGGGCCGCCGGGCACCGGTAAATCCATGCTGGCCTCGCGCATGCCCGGCATCCTGCCCGACCTGACC
GAGACGGAAGCATTGGAAACCGCGGCGGTCGCCTCGGTCAGCGGGATGCCCTTCGACCCGGCAGTCTGGCGCCGACCGCC
GTACCGCGCCCCTCATCACATTGCCTCCGCACCGGCGCTGGTAGGCGGCGGGAGCAGTCCCAAACCCGGGGAGATTTCGC
TGGCCCATAACGGCGTGCTGTTCCTGGACGAGTTGCCGGAATTCGACCGGCGGGTGCTGGAGGTCCTGCGCGAACCCCTG
GAGAGCGGCACCATCACCATTTCCCGCGCCACCCAACGGCTGGATTTCCCCGCCCGTTTCCAGCTCGTCGCCGCGATGAA
TCCCTGCCCCTGCGGCTATCTGGGCGATGCCTCCGGGCGCTGCCATTGCTCGGCCGAACAGGTGGCCCGCTACCGTGCAC
GCATCTCCGGACCTCTCCTGGACCGGATCGACATCCACATCGACGTGCCCCGCCAGGACCCGGCCACACTTATGGACGGC
GCGTCCCCGAGCGAGGAGACCAGCGTTCAGGTCCGATCCCGCGTGACTGCCGCCCGCGAGCGGGCGCTCCGCCGCAGCGG
CCAGCCCAACGCACTGCTCACGCCGCGTCAGGTCGAGCGCCATTGCGCCCCCGACAGTGCGGGACGCGCCTTGTTGGAAC
GGGCCATGACACGGCTGAATCTGTCGCACCGCGCCTACCATCGCATTTTGAAGCTGGCCCGCACCATCGCCGATCTGGAT
GGCAGCGAGGCAATCACAGCCACCCACATCGGAGAAGCCATCGGCTACCGGCGTCTCGACCGCGCCGCGACCCGATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.886

99.208

0.564
  comM Vibrio campbellii strain DS40M4

56.287

99.208

0.558
  comM Haemophilus influenzae Rd KW20

54.167

99.802

0.541
  comM Glaesserella parasuis strain SC1401

53.045

100

0.535
  comM Legionella pneumophila str. Paris

48.795

98.614

0.481
  comM Legionella pneumophila strain ERS1305867

48.795

98.614

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.457

100

0.467

Multiple sequence alignment