Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RA876_RS02995 Genome accession   NZ_CP019240
Coordinates   617382..618857 (+) Length   491 a.a.
NCBI ID   WP_075586113.1    Uniprot ID   -
Organism   Rhodoferax antarcticus strain DSMZ24876     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 612382..623857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA876_RS02980 (RA876_02980) - 613555..614868 (+) 1314 WP_198930612.1 DNA cytosine methyltransferase -
  RA876_RS02985 (RA876_02985) - 614888..615736 (+) 849 WP_075586111.1 endonuclease -
  RA876_RS02990 (RA876_02990) - 615808..617394 (-) 1587 WP_075586112.1 recombinase family protein -
  RA876_RS02995 (RA876_02995) comM 617382..618857 (+) 1476 WP_075586113.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RA876_RS03000 (RA876_03000) - 618883..619494 (-) 612 WP_075586114.1 CDP-alcohol phosphatidyltransferase family protein -
  RA876_RS03005 (RA876_03005) - 619487..620131 (-) 645 WP_075586115.1 ATP-binding cassette domain-containing protein -
  RA876_RS03010 (RA876_03010) - 620133..621746 (-) 1614 WP_075586116.1 hypothetical protein -
  RA876_RS03015 (RA876_03015) - 621733..622932 (-) 1200 WP_075586117.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 51960.43 Da        Isoelectric Point: 8.2611

>NTDB_id=214348 RA876_RS02995 WP_075586113.1 617382..618857(+) (comM) [Rhodoferax antarcticus strain DSMZ24876]
MRQSFDNYASSFTLVGLADVEVKEARERVRSAIQNSGLEFPNNKKIVVNLAPADLPKDSGRFDLPIALGILAASGQIDAG
ALAGWEFAGELSLSGELRPVRGALAMSLALYGSGVVTQLVLPPDSAEEAALVPTAQVYRARHLLDVVQQFLPATSESIAT
STGEGWERIDSAPLLKAASYPDLADVKGQLGAKRALEIAAAGGHSVLLVGPPGSGKSMLAQRFVGLLPPMTTDEALQSAA
VASLGGRFSLDSWARRPTCHPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDEFPEFPRAALEALREPLETGTITISRA
ARRSEFPARFQLIGAMNPCPCGYLGSSQKACRCTPDQVARYQGKLSGPLVDRIDLHVEVPAVAAPELMQAPPGEPSAVIQ
ARCVAARARAITRQGKSNHALQGQEIDQFVLLDEAAVKFLNVAATRLGWSARSTHRALKVARTIADLAGARTTQVTHVAE
AMQYRRALKTA

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=214348 RA876_RS02995 WP_075586113.1 617382..618857(+) (comM) [Rhodoferax antarcticus strain DSMZ24876]
ATGCGTCAGTCATTTGACAATTATGCATCAAGCTTCACCCTGGTAGGCCTGGCTGACGTGGAGGTGAAAGAGGCGCGTGA
GCGGGTGCGATCGGCCATCCAGAACTCCGGCTTGGAGTTTCCTAACAACAAAAAAATCGTCGTCAATCTGGCCCCGGCTG
ATTTGCCCAAGGATTCTGGCCGGTTTGACCTGCCGATTGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATTGATGCTGGC
GCCTTGGCGGGCTGGGAGTTTGCTGGCGAGCTGTCGCTATCGGGCGAATTGCGCCCGGTACGGGGTGCACTCGCCATGAG
CTTGGCGCTGTATGGCAGCGGTGTGGTGACGCAACTGGTGTTGCCACCAGACAGCGCCGAGGAGGCCGCCCTGGTGCCCA
CCGCGCAGGTGTACCGTGCCCGGCATCTGCTGGATGTGGTGCAGCAGTTCTTGCCAGCCACTTCCGAAAGCATAGCTACT
AGCACAGGTGAGGGCTGGGAGCGCATTGATTCTGCCCCACTTTTAAAAGCCGCCAGCTACCCCGATCTCGCTGATGTCAA
AGGCCAACTGGGGGCCAAGCGGGCGCTGGAAATTGCCGCGGCAGGCGGCCACAGTGTTTTGTTGGTGGGCCCGCCCGGCT
CGGGCAAGTCCATGCTGGCGCAGCGTTTTGTGGGCCTATTGCCGCCCATGACCACTGATGAGGCCTTGCAAAGTGCGGCC
GTGGCAAGTCTGGGTGGACGCTTTTCGCTGGACTCCTGGGCGCGTCGGCCCACTTGTCATCCGCACCACACCGCCAGCGC
GGTCGCATTAGTGGGCGGTGGCTCGCCGCCGCGGCCTGGTGAAATATCGCTGGCGCACCACGGTGTGCTGTTTTTGGACG
AGTTTCCCGAGTTTCCCCGCGCCGCGCTGGAAGCTTTGCGCGAGCCGCTGGAGACCGGCACCATCACCATCTCACGGGCG
GCGCGGCGCAGCGAGTTTCCGGCACGCTTCCAACTGATTGGGGCGATGAACCCGTGTCCGTGCGGCTATTTGGGCTCCAG
CCAGAAAGCTTGCCGCTGCACGCCAGACCAGGTGGCGCGTTACCAAGGCAAGCTCAGCGGCCCGCTGGTGGACCGGATTG
ATCTGCATGTGGAAGTGCCCGCCGTTGCGGCCCCCGAGCTGATGCAAGCCCCGCCTGGCGAGCCCAGCGCGGTCATTCAG
GCGCGCTGCGTGGCGGCACGAGCGCGCGCCATCACCCGCCAAGGCAAGTCAAATCACGCGCTACAGGGGCAGGAGATTGA
CCAGTTTGTGCTGCTGGACGAGGCCGCCGTCAAATTCCTGAACGTGGCCGCCACCCGCCTCGGTTGGTCGGCGCGCAGCA
CCCACCGTGCCTTGAAAGTCGCCCGCACCATTGCTGACCTGGCGGGTGCGCGCACCACCCAGGTCACCCACGTGGCCGAG
GCCATGCAATACCGGCGGGCGTTAAAGACGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(182-384)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(393-485)

Subunit ChlI of Mg-chelatase (ChlI)

(8-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50

98.574

0.493
  comM Vibrio campbellii strain DS40M4

49.485

98.778

0.489
  comM Glaesserella parasuis strain SC1401

49.057

97.149

0.477
  comM Haemophilus influenzae Rd KW20

47.746

99.389

0.475
  comM Legionella pneumophila str. Paris

47.059

100

0.473
  comM Legionella pneumophila strain ERS1305867

47.059

100

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.892

98.371

0.432

Multiple sequence alignment