Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RD110_RS00910 Genome accession   NZ_CP019236
Coordinates   202072..203619 (-) Length   515 a.a.
NCBI ID   WP_076195821.1    Uniprot ID   A0A1P8JQA5
Organism   Rhodoferax koreense strain DCY-110     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 197072..208619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RD110_RS00895 (RD110_00895) - 199428..199901 (+) 474 WP_162277342.1 hypothetical protein -
  RD110_RS00900 (RD110_00900) - 199962..200846 (+) 885 WP_076195817.1 YihY/virulence factor BrkB family protein -
  RD110_RS00905 (RD110_00905) - 201251..202060 (+) 810 WP_076195819.1 PEP-CTERM/exosortase system-associated acyltransferase -
  RD110_RS00910 (RD110_00910) comM 202072..203619 (-) 1548 WP_076195821.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RD110_RS00915 (RD110_00915) glnK 203993..204331 (+) 339 WP_076195823.1 P-II family nitrogen regulator -
  RD110_RS00920 (RD110_00920) - 204363..205910 (+) 1548 WP_076195825.1 ammonium transporter -
  RD110_RS00925 (RD110_00925) - 206059..206922 (+) 864 WP_076195827.1 aldose 1-epimerase -
  RD110_RS00930 (RD110_00930) - 206919..207848 (+) 930 WP_076195829.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54566.53 Da        Isoelectric Point: 8.9072

>NTDB_id=214311 RD110_RS00910 WP_076195821.1 202072..203619(-) (comM) [Rhodoferax koreense strain DCY-110]
MSLSLVQSRALLGLEAPAVTVEVHLVNGLPSFTLVGLADVEVKEARERVRSAIQNAGLAFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGSRLAGYEFAGELSLSGALRPVRGALAVSLALQAQQVRTRLVLPPASAEEAALVPDAEVYRA
RHLLDVVRHFLPEPATATAEDSHLDADGWARLAPRVLPPTAPYADLSDVKGQAAAKRALEIAAAGGHSLLMVGPPGSGKS
MLAQRFAGLLPPMTVEEALQSAAVASIGGRFVLERWATRPTCTPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDELPE
FPRSALEALREPLETGRITIARAARRAEFPARFQMIAAMNPCPCGYLGSRQTACRCSPDQVLRYQSKLSGPLIDRIDLHV
EVPALAPQELIHAPPGESTDAIRTRSSAARTRAIARQGKSNQALEGQEIDAQLRLDAGAAKFLNTAAARLGWSARSIHRA
LKVARTIADLAGAENTETAHVAEAVQYRRALRPQA

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=214311 RD110_RS00910 WP_076195821.1 202072..203619(-) (comM) [Rhodoferax koreense strain DCY-110]
ATGAGCTTATCTTTGGTGCAAAGCCGCGCTTTGCTGGGGTTGGAAGCGCCGGCTGTCACCGTTGAGGTGCATCTCGTCAA
CGGTTTGCCGAGCTTCACCCTCGTCGGTCTCGCCGATGTGGAGGTCAAGGAGGCCCGCGAACGCGTGCGGTCGGCCATCC
AGAATGCCGGGCTAGCGTTTCCGCACAACAAGCGCATCACGGTCAACCTGGCCCCGGCCGATCTGCCGAAGGACTCGGGC
CGCTTCGACCTGCCGATCGCCCTGGGCATTCTTGCAGCCAGCGGACAGATCGACGGCAGCCGCCTTGCCGGCTACGAGTT
CGCGGGCGAACTTTCGCTTTCGGGTGCGCTGCGACCGGTGCGCGGCGCCCTCGCGGTGAGCCTGGCGCTGCAGGCGCAGC
AGGTGCGCACGCGTCTGGTGCTGCCGCCGGCCAGTGCGGAGGAGGCCGCACTGGTGCCCGATGCCGAGGTGTACCGCGCG
CGGCATCTGCTGGACGTGGTGCGCCACTTTCTGCCGGAACCCGCAACGGCAACGGCCGAAGACAGCCACCTTGACGCCGA
TGGCTGGGCACGGTTGGCACCGCGCGTGCTGCCGCCCACCGCGCCCTACGCCGACCTGTCCGACGTGAAGGGCCAGGCCG
CTGCCAAGCGTGCGTTGGAGATCGCCGCGGCCGGAGGCCACAGCCTGCTGATGGTCGGTCCGCCCGGTTCCGGCAAATCC
ATGCTGGCCCAGCGTTTCGCCGGGCTGCTGCCGCCAATGACCGTGGAGGAAGCCCTGCAAAGTGCCGCCGTGGCCAGCAT
CGGGGGGCGTTTCGTGCTCGAACGCTGGGCCACCCGGCCCACCTGCACACCGCACCACACGGCCAGCGCCGTGGCGCTGG
TCGGTGGCGGCTCGCCGCCGCGCCCGGGGGAAATTTCGCTGGCGCACCACGGCGTGCTGTTCCTCGACGAACTGCCCGAG
TTTCCACGCTCGGCGCTCGAGGCCCTGCGCGAACCGCTGGAGACCGGCCGCATCACCATTGCGCGTGCGGCGCGGCGAGC
GGAATTTCCGGCCCGGTTCCAGATGATCGCGGCCATGAACCCTTGCCCTTGCGGCTACCTCGGCTCCAGGCAGACCGCCT
GCCGCTGTTCTCCCGATCAGGTGCTGCGTTATCAGAGCAAACTCAGCGGGCCGCTGATCGACCGGATCGATCTCCACGTG
GAGGTGCCGGCGCTCGCACCGCAGGAGCTGATCCATGCGCCGCCCGGCGAATCGACCGATGCCATCCGCACACGCAGCAG
CGCGGCGCGCACACGGGCCATCGCACGCCAGGGCAAATCCAACCAGGCGCTGGAGGGGCAGGAGATCGATGCGCAATTGC
GGCTGGACGCGGGGGCGGCGAAGTTCCTCAACACCGCGGCCGCGCGATTGGGCTGGTCGGCGCGCAGCATCCACCGTGCG
CTCAAGGTGGCGCGCACCATTGCCGATCTGGCCGGGGCGGAGAACACCGAAACGGCCCACGTGGCCGAAGCCGTGCAATA
CCGGCGGGCATTGCGCCCGCAGGCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-508)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8JQA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.577

100

0.511
  comM Vibrio campbellii strain DS40M4

50.877

99.612

0.507
  comM Vibrio cholerae strain A1552

51.176

99.029

0.507
  comM Glaesserella parasuis strain SC1401

50.195

99.806

0.501
  comM Legionella pneumophila str. Paris

47.868

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.868

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.549

99.029

0.421

Multiple sequence alignment