Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SEEPO729_RS22495 Genome accession   NZ_CP019186
Coordinates   4423018..4424538 (+) Length   506 a.a.
NCBI ID   WP_000050218.1    Uniprot ID   A0A5H7WAR7
Organism   Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4418018..4429538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEPO729_RS22475 (SEEPO729_022170) ilvE 4419575..4420504 (-) 930 WP_000208528.1 branched-chain-amino-acid transaminase -
  SEEPO729_RS22480 (SEEPO729_022175) ilvM 4420522..4420785 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  SEEPO729_RS22485 (SEEPO729_022180) ilvG 4420782..4422428 (-) 1647 WP_001012563.1 acetolactate synthase 2 catalytic subunit -
  SEEPO729_RS24250 ilvX 4422431..4422481 (-) 51 WP_192930503.1 peptide IlvX -
  SEEPO729_RS22490 (SEEPO729_022185) ilvL 4422568..4422666 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SEEPO729_RS22495 (SEEPO729_022190) comM 4423018..4424538 (+) 1521 WP_000050218.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SEEPO729_RS22500 (SEEPO729_022195) maoP 4424563..4424901 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  SEEPO729_RS22505 (SEEPO729_022200) hdfR 4425008..4425856 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55017.19 Da        Isoelectric Point: 8.4881

>NTDB_id=213874 SEEPO729_RS22495 WP_000050218.1 4423018..4424538(+) (comM) [Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASSTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCILHHDDARWLEDTLVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=213874 SEEPO729_RS22495 WP_000050218.1 4423018..4424538(+) (comM) [Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729]
ATGTCACTGGCGATTGTTCATACTCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGCGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATCAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGTCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAA
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGTCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAACGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGTCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCCAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATCGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCACCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAGCAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGGCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATATTGTATTTTGCATCACGATGACGCCCGCTGGCTTGAAGACACGCTGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTGGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCGCGTCAGCATTTGCAGGAGGCGGTAAGCTATCGGGCGATAGACAGATTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5H7WAR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Vibrio cholerae strain A1552

58.812

99.802

0.587
  comM Glaesserella parasuis strain SC1401

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

57.341

99.605

0.571
  comM Legionella pneumophila str. Paris

47.686

98.221

0.468
  comM Legionella pneumophila strain ERS1305867

47.686

98.221

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

100

0.429

Multiple sequence alignment