Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ATS72_RS10700 Genome accession   NZ_CP019162
Coordinates   2305249..2306757 (-) Length   502 a.a.
NCBI ID   WP_006791374.1    Uniprot ID   A0AAD0CCF4
Organism   Pseudoalteromonas sp. 13-15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2300249..2311757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATS72_RS10685 (ATS72_010690) - 2300671..2301747 (-) 1077 WP_008129553.1 hemolysin family protein -
  ATS72_RS10690 (ATS72_010695) - 2301832..2304327 (+) 2496 WP_058429966.1 prolyl oligopeptidase family serine peptidase -
  ATS72_RS10695 (ATS72_010700) - 2304511..2305215 (+) 705 WP_006791373.1 response regulator transcription factor -
  ATS72_RS10700 (ATS72_010705) comM 2305249..2306757 (-) 1509 WP_006791374.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ATS72_RS10705 (ATS72_010710) - 2306792..2307406 (-) 615 WP_058429965.1 trimeric intracellular cation channel family protein -
  ATS72_RS10725 (ATS72_010730) cysQ 2308678..2309481 (-) 804 WP_006791377.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ATS72_RS10730 (ATS72_010735) nudE 2309474..2310046 (-) 573 WP_033035276.1 ADP compounds hydrolase NudE -
  ATS72_RS10735 (ATS72_010740) yrfG 2310109..2310756 (+) 648 WP_006791379.1 GMP/IMP nucleotidase -
  ATS72_RS10740 (ATS72_010745) - 2310753..2311376 (-) 624 WP_006791380.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54986.05 Da        Isoelectric Point: 7.4837

>NTDB_id=213441 ATS72_RS10700 WP_006791374.1 2305249..2306757(-) (comM) [Pseudoalteromonas sp. 13-15]
MSLARIYSRAQVGINAPEVIVEVHLGTGLPAFHIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHKYEFYGELALNGEVRGVNAILPSVLAAKEQNRCCFLPIANDSLASLVNGVKRKAVSSI
QEVWGDLLNQQPLPLNIEYPDCTQAPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPAMS
DDEALSTAALYSIIGHSIDLTNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGTVTISRAARQMEFPAQFQLITALNPSPTGSHTDKRATPDQVIRYLSRVSGPFVDRIDLQIELPRLTSVELQSTKQEE
TSAQVRARVEAAYYIQLKRQGKVNARLNNKEMSIHCELAPAELQFLAKASEKLSLSPRSYHRVIKVARTISDLKGNEKIS
LDDLKEALNYRAFERLIAQLTK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=213441 ATS72_RS10700 WP_006791374.1 2305249..2306757(-) (comM) [Pseudoalteromonas sp. 13-15]
ATGTCATTAGCTCGTATATATTCTCGTGCTCAGGTGGGTATTAATGCCCCTGAAGTTATTGTAGAGGTTCACTTAGGAAC
TGGTTTACCCGCATTCCACATTGTAGGCCTTCCCGAAGCCTCTGTTAAAGAGTCAAAAGACAGAGTGCGTAGCGCGCTTG
AAAACTCTCAATTTGGTTTTCCTGATCAACGCATTACTGTTAATTTAGCCCCAGCTGATTTACCCAAAGACGGTGGCCGG
TTTGATTTGGCAATTGCCGTAGGCATTTTGGTGGCATCAGGGCAAATAGTGTGCCCTGATATTCATAAATATGAGTTTTA
CGGTGAGCTTGCACTCAACGGTGAGGTACGTGGAGTAAATGCTATTTTGCCCTCTGTGCTTGCAGCTAAGGAACAAAACC
GCTGCTGTTTTTTGCCCATCGCTAATGATAGCCTGGCAAGCCTTGTAAATGGCGTAAAGCGCAAAGCGGTAAGTTCGATT
CAAGAAGTATGGGGTGATTTACTAAACCAACAGCCGTTGCCGTTAAATATAGAGTATCCAGACTGTACGCAAGCACCTGA
CTTTTTACTCGATTTGAGCGACGTAAAAGGTCAACCCGGCGCTAAACGTGTATTAGAAATAGCCGCTGCAGGCGGGCACA
ACCTGCTATTTTTAGGTCCACCGGGAACCGGTAAATCAATGCTTGCTCAACGAATGGCCACAATAATGCCGGCTATGTCT
GATGATGAGGCACTTTCAACTGCCGCACTTTATTCAATTATTGGTCATTCAATCGATTTAACAAACTGGCGGCAACGCCC
TTTTCGTAATCCTCATCATACCTGCTCGGCGGTTGCATTAGTGGGGGGGTCATCAAACCCTAAGCCGGGTGAAATTTCGC
TGGCACACAATGGGGTATTATTTTTAGACGAGCTACCAGAGTTTGAGCGCAAAGTGCTCGACTCCCTTCGTGAGCCAATG
GAAACCGGTACGGTAACTATTTCGCGTGCGGCGCGGCAAATGGAGTTTCCTGCGCAGTTTCAGCTCATTACAGCGTTAAA
CCCAAGTCCTACGGGAAGCCATACCGATAAAAGAGCAACACCCGATCAAGTTATACGTTATTTATCTCGTGTATCAGGCC
CATTTGTTGACCGTATTGATTTGCAAATAGAGCTACCACGGTTAACTAGCGTAGAACTGCAAAGCACTAAGCAAGAAGAA
ACCAGTGCACAAGTACGTGCACGGGTAGAAGCGGCTTATTACATACAGTTAAAACGCCAAGGCAAAGTGAATGCGCGGCT
AAATAATAAAGAGATGAGTATTCACTGTGAGCTTGCCCCAGCAGAGCTGCAGTTTTTGGCTAAGGCCAGTGAAAAGCTGT
CTTTATCACCGCGTTCTTACCATAGAGTTATTAAAGTAGCGCGTACGATTAGCGATTTAAAAGGAAATGAAAAAATTAGC
TTAGACGATTTAAAAGAGGCATTAAATTACAGAGCCTTTGAGCGCTTAATTGCTCAACTTACTAAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.357

100

0.556
  comM Haemophilus influenzae Rd KW20

53.937

100

0.546
  comM Vibrio campbellii strain DS40M4

53.77

100

0.54
  comM Glaesserella parasuis strain SC1401

53.36

100

0.538
  comM Legionella pneumophila str. Paris

50.503

99.004

0.5
  comM Legionella pneumophila strain ERS1305867

50.503

99.004

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

100

0.43

Multiple sequence alignment