Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVG18_RS01200 Genome accession   NZ_CP019143
Coordinates   262163..263653 (-) Length   496 a.a.
NCBI ID   WP_004732527.1    Uniprot ID   A0AAJ2M8H2
Organism   Acinetobacter lwoffii strain ZS207     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 257163..268653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG18_RS01175 (BVG18_06795) - 257806..258186 (-) 381 WP_005108436.1 hypothetical protein -
  BVG18_RS01180 (BVG18_06800) - 258287..258685 (+) 399 WP_086044354.1 MAPEG family protein -
  BVG18_RS01185 (BVG18_06805) ppa 258803..259339 (+) 537 WP_004281037.1 inorganic diphosphatase -
  BVG18_RS01190 (BVG18_06810) - 259436..260782 (-) 1347 WP_086044355.1 OprD family outer membrane porin -
  BVG18_RS01195 (BVG18_06815) - 261381..262115 (+) 735 WP_004732532.1 TorF family putative porin -
  BVG18_RS01200 (BVG18_06820) comM 262163..263653 (-) 1491 WP_004732527.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVG18_RS01205 (BVG18_06825) - 263720..263947 (-) 228 WP_004732524.1 accessory factor UbiK family protein -
  BVG18_RS01210 (BVG18_06830) glnK 264225..264563 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  BVG18_RS01215 (BVG18_06835) - 264623..266035 (+) 1413 WP_086044356.1 ammonium transporter -
  BVG18_RS01220 (BVG18_06840) nrdR 266176..266640 (+) 465 WP_004281044.1 transcriptional regulator NrdR -
  BVG18_RS01225 (BVG18_06845) ribD 266643..267731 (+) 1089 WP_086044357.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54564.46 Da        Isoelectric Point: 7.3771

>NTDB_id=213363 BVG18_RS01200 WP_004732527.1 262163..263653(-) (comM) [Acinetobacter lwoffii strain ZS207]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPENCTEHLEFIGELALDGQLRPVSGTLSIAIACQSDQHQLILPGPNAQEACQLPDFKVFAANHL
KEVCEHLSQAQRLPQIEASPLNTDHFYKFDLADVKGQLRPRRGLEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLKT
QENLEVASIYSVANANHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLEAKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLQAHELQDNRPTE
NSETVRQRVIAAYEIQMQRQNTLNMSLSPKQLEQYAALDQSAQNMLEMAQQKLNLSARGYHRVLRVARTIADLNQSPDIQ
SQHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=213363 BVG18_RS01200 WP_004732527.1 262163..263653(-) (comM) [Acinetobacter lwoffii strain ZS207]
ATGTCTTTTGCCAAAATTTATACACGAGGCTTGCTGGGCCTGCATGCGCCTTTAATTGAAGTCGAAGTTCATGTCAGTTC
GGGTATGCCTTCGCTCACTATAGTGGGGCTTCCCGAAGCGGCGGTACGTGAAAGTAAAGACCGGGTCCGTTCTGCCATTT
TGAATAGCGGCTTTCAATTTCCAACCAAACGTCTGACCATTAATCTGGCCCCTGCAGATCTGCCAAAAGATGGCTCACGT
CTGGACTTACCGATTGCTTTAGGTATTTTAGTGGCCTCTGGGCAGCTGCCTGAAAATTGCACCGAGCATCTTGAATTTAT
TGGAGAATTGGCCCTCGATGGTCAATTACGTCCTGTCAGCGGCACCTTAAGTATTGCCATTGCCTGTCAAAGTGACCAGC
ATCAACTGATTTTGCCTGGCCCCAATGCACAGGAAGCCTGTCAGCTCCCAGACTTTAAAGTCTTTGCAGCCAATCATTTA
AAAGAAGTGTGTGAACATCTTTCCCAAGCGCAGCGCTTACCGCAAATAGAAGCCAGTCCACTCAATACAGACCATTTTTA
TAAGTTTGATCTGGCGGATGTAAAAGGACAATTACGACCACGGCGTGGCTTGGAAATTGCTGCGGCAGGTGGTCATTCCC
TGCTGTTTCGAGGCCCACCCGGAACAGGCAAGACCTTGCTGGCTTCTCGATTGGCCAGTATTTTGCCGCCCTTAAAGACG
CAGGAAAATCTGGAAGTGGCCAGTATTTATTCGGTGGCGAATGCCAATCACCCTTTTGGACAACGGCCGTTTCGAGCACC
ACACCATACTGCTTCTGCGGTGGCATTGGTCGGTGGCGGCTCACACCCCAAGCCAGGAGAAATTACCCTGGCACATTTAG
GGGTTTTATTTCTGGACGAACTGCCTGAATTCGACCGCAAAGTGCTGGAGGTTCTACGTCAGCCTTTGGAAGCGAAAGAA
ATCGTCATTTCCCGGGCATCACGCCAAATTACCTTTCCGGCTAATTTCCAGTTGGTGGCTGCCATGAATCCATGTCCATG
TGGGTATGCATTCAATCAAGATATCCGCTGCCAATGTTCACCCGAAAGTATTAAACGCTATCAGAACCGGATTTCAGGCC
CGTTGCTGGATCGGATTGATTTGCATATTGATGTACCGCCATTACAAGCGCATGAATTACAGGACAATCGACCTACAGAA
AACTCAGAAACGGTTAGACAACGCGTCATTGCAGCCTATGAAATTCAGATGCAACGGCAAAATACCTTGAATATGAGTTT
GAGTCCAAAGCAGTTAGAGCAATATGCCGCATTAGATCAGTCTGCTCAGAATATGCTTGAAATGGCTCAGCAAAAACTGA
ATTTATCAGCGCGCGGCTATCATCGGGTCTTGCGTGTTGCACGCACCATTGCCGATTTAAATCAAAGTCCAGATATTCAA
AGTCAGCATCTTTCGGAGGCCCTGTCTTATCGCGGGCAGCAGCAGATTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.102

100

0.514
  comM Vibrio cholerae strain A1552

50.6

100

0.51
  comM Legionella pneumophila str. Paris

51.008

100

0.51
  comM Legionella pneumophila strain ERS1305867

51.008

100

0.51
  comM Glaesserella parasuis strain SC1401

49.603

100

0.504
  comM Vibrio campbellii strain DS40M4

49.2

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.525

100

0.484

Multiple sequence alignment