Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BV404_RS14040 Genome accession   NZ_CP019118
Coordinates   2987236..2988759 (-) Length   507 a.a.
NCBI ID   WP_075989121.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2982236..2993759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS14015 - 2982585..2982851 (+) 267 WP_075989120.1 YihD family protein -
  BV404_RS14020 ccoG 2983113..2984537 (+) 1425 WP_020332579.1 cytochrome c oxidase accessory protein CcoG -
  BV404_RS14025 - 2984582..2985568 (+) 987 WP_047461825.1 serine/threonine protein kinase -
  BV404_RS14030 - 2985599..2986198 (+) 600 WP_032082180.1 thiol:disulfide interchange protein DsbA/DsbL -
  BV404_RS14035 - 2986239..2987132 (-) 894 WP_020332582.1 acyltransferase -
  BV404_RS14040 comM 2987236..2988759 (-) 1524 WP_075989121.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BV404_RS14045 ilvG 2989243..2990889 (+) 1647 WP_075989122.1 acetolactate synthase 2 catalytic subunit -
  BV404_RS14050 ilvM 2990901..2991185 (+) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  BV404_RS14055 ilvE 2991197..2992138 (+) 942 WP_075989123.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55128.06 Da        Isoelectric Point: 8.4958

>NTDB_id=213289 BV404_RS14040 WP_075989121.1 2987236..2988759(-) (comM) [Vibrio fluvialis strain 12605]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHYNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDTRDASVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTD
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCTLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=213289 BV404_RS14040 WP_075989121.1 2987236..2988759(-) (comM) [Vibrio fluvialis strain 12605]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTCGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGCATTCTGGCTGCCTCGGATCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTGCCTCATTACAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGACTTATGTGGTCAGCAGACGTTATCGCTGTTTCAAAGTGACACGCGCGACGCCAGCGTACCGCG
TGAGCGCGATTTGCAGGACATCATTGGTCAGCAGCAGGGCAAGCGGGCGTTGGAGATCGCGGCGGCGGGCAACCACAATC
TGCTGTTTCTCGGTCCGCCGGGCACGGGGAAAACCATGTTGGCCTCGCGTCTGTGCGATCTGCTGCCGGAGATGACCGAT
GCCGAGGCGATGGAGACTGCATCGGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCATAACTGGAAACAGCGTCCATT
TCGTGCGCCGCATCATTCCAGCTCCATGGCCGCGCTGGTGGGCGGCGGCACCATTCCTCGCCCCGGAGAAATCTCACTTG
CTCACAATGGCCTGCTGTTTCTGGATGAAATGCCGGAATTTGAACGCAAAGTGCTCGATTCGCTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGTGCGCAGGGTAAAACCCGTTTTCCGGCGCGTTTTCAATTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATTGAAATTCCGGCGTTGCCCAAAGGTACTTTGTCGCATGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGTTGGCACGCAGTGGCAAAGTGAATGC
GCTGTTGCAAAGCCGTGAAATTGAAACTTACTGTACGCTCAGTCAGCCGGATGCGGAGTTTCTGGAAAATGCGCTGCACC
GCCTAGGGCTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGTGCGCACCTCGCCGAAGCGCTCGGGTATCGCGCTATGGATCGGTTACTCAAACAGCTCACCGCCCAGTCGGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.349

100

0.893
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.803

0.43

Multiple sequence alignment