Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BV404_RS12650 Genome accession   NZ_CP019118
Coordinates   2700211..2700741 (-) Length   176 a.a.
NCBI ID   WP_020332215.1    Uniprot ID   S7JBV3
Organism   Vibrio fluvialis strain 12605     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2695211..2705741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS12630 - 2695674..2695952 (-) 279 WP_172560579.1 MSHA biogenesis protein MshK -
  BV404_RS12635 - 2695978..2696628 (-) 651 WP_075989002.1 MSHA biogenesis protein MshJ -
  BV404_RS12640 - 2696625..2698073 (-) 1449 WP_075989003.1 MSHA biogenesis protein MshI -
  BV404_RS12645 csrD 2698081..2700075 (-) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  BV404_RS12650 ssb 2700211..2700741 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  BV404_RS12655 qstR 2701024..2701674 (+) 651 WP_075989004.1 LuxR C-terminal-related transcriptional regulator Regulator
  BV404_RS12660 galU 2701802..2702671 (+) 870 WP_032080513.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BV404_RS12665 uvrA 2702809..2705631 (+) 2823 WP_044364108.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19526.69 Da        Isoelectric Point: 5.7626

>NTDB_id=213285 BV404_RS12650 WP_020332215.1 2700211..2700741(-) (ssb) [Vibrio fluvialis strain 12605]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=213285 BV404_RS12650 WP_020332215.1 2700211..2700741(-) (ssb) [Vibrio fluvialis strain 12605]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGTCAGCTACAAACACGTAAGTGGCAAGATCAAAGCGGCCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

89.385

100

0.909
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

46.739

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.489

Multiple sequence alignment