Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CS548_RS08535 Genome accession   NZ_CP024594
Coordinates   1856627..1857490 (-) Length   287 a.a.
NCBI ID   WP_004585131.1    Uniprot ID   A0A099WY42
Organism   Porphyromonas gingivalis strain KCOM 2805     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1851627..1862490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS548_RS08510 (CS548_08495) - 1851886..1853103 (-) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  CS548_RS08515 (CS548_08500) - 1853106..1855061 (-) 1956 WP_012457667.1 LptF/LptG family permease -
  CS548_RS08520 (CS548_08505) rplI 1855337..1855876 (-) 540 WP_012457666.1 50S ribosomal protein L9 -
  CS548_RS08525 (CS548_08510) rpsR 1855901..1856173 (-) 273 WP_004585133.1 30S ribosomal protein S18 -
  CS548_RS08530 (CS548_08515) rpsF 1856177..1856530 (-) 354 WP_099811655.1 30S ribosomal protein S6 -
  CS548_RS08535 (CS548_08520) rpoS 1856627..1857490 (-) 864 WP_004585131.1 RNA polymerase sigma factor RpoD/SigA Regulator
  CS548_RS08540 (CS548_08525) - 1857680..1859176 (-) 1497 WP_004585130.1 DegQ family serine endoprotease -
  CS548_RS08545 (CS548_08530) - 1859393..1859650 (-) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  CS548_RS11515 - 1859871..1860050 (+) 180 WP_230484037.1 DUF1661 domain-containing protein -
  CS548_RS08550 (CS548_08535) guaA 1860367..1861887 (+) 1521 WP_004585128.1 glutamine-hydrolyzing GMP synthase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32602.30 Da        Isoelectric Point: 6.9850

>NTDB_id=213286 CS548_RS08535 WP_004585131.1 1856627..1857490(-) (rpoS) [Porphyromonas gingivalis strain KCOM 2805]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNKCKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=213286 CS548_RS08535 WP_004585131.1 1856627..1857490(-) (rpoS) [Porphyromonas gingivalis strain KCOM 2805]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCGTCAGCAGAGTTGGCTAAG
GAGCTGGACATCGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAGGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGCCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACAAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099WY42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366

Multiple sequence alignment