Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BV404_RS12655 Genome accession   NZ_CP019118
Coordinates   2701024..2701674 (+) Length   216 a.a.
NCBI ID   WP_075989004.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2696024..2706674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS12640 - 2696625..2698073 (-) 1449 WP_075989003.1 MSHA biogenesis protein MshI -
  BV404_RS12645 csrD 2698081..2700075 (-) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  BV404_RS12650 ssb 2700211..2700741 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  BV404_RS12655 qstR 2701024..2701674 (+) 651 WP_075989004.1 LuxR C-terminal-related transcriptional regulator Regulator
  BV404_RS12660 galU 2701802..2702671 (+) 870 WP_032080513.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BV404_RS12665 uvrA 2702809..2705631 (+) 2823 WP_044364108.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24845.65 Da        Isoelectric Point: 9.2330

>NTDB_id=213286 BV404_RS12655 WP_075989004.1 2701024..2701674(+) (qstR) [Vibrio fluvialis strain 12605]
MQRANYARTIYYLCLDQTASAPPVLQSALDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=213286 BV404_RS12655 WP_075989004.1 2701024..2701674(+) (qstR) [Vibrio fluvialis strain 12605]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTAGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTACAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTCGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACTATCGAACTTACTACAAGGGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTGTTTATCAGCGAATTTACCGT
CAAATCTCACCTCTACCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACTCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment