Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BMF08_RS07285 Genome accession   NZ_CP019113
Coordinates   1516527..1517060 (+) Length   177 a.a.
NCBI ID   WP_072570201.1    Uniprot ID   -
Organism   Enterobacter sp. SA187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1511527..1522060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF08_RS07265 aphA 1512215..1512928 (+) 714 WP_072570198.1 acid phosphatase AphA -
  BMF08_RS07270 - 1513072..1513425 (+) 354 WP_072570199.1 MmcQ/YjbR family DNA-binding protein -
  BMF08_RS07275 uvrA 1513426..1516251 (-) 2826 WP_072570200.1 excinuclease ABC subunit UvrA -
  BMF08_RS07285 ssb 1516527..1517060 (+) 534 WP_072570201.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BMF08_RS07290 - 1517123..1517404 (-) 282 WP_072570202.1 YjcB family protein -
  BMF08_RS07295 - 1517955..1519517 (+) 1563 WP_072570203.1 EAL domain-containing protein -
  BMF08_RS07300 soxS 1519573..1519896 (-) 324 WP_072570204.1 superoxide response transcriptional regulator SoxS -
  BMF08_RS07305 soxR 1519981..1520439 (+) 459 WP_072570205.1 redox-sensitive transcriptional activator SoxR -
  BMF08_RS07310 - 1520719..1521387 (+) 669 WP_072570206.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18960.91 Da        Isoelectric Point: 5.2456

>NTDB_id=213131 BMF08_RS07285 WP_072570201.1 1516527..1517060(+) (ssb) [Enterobacter sp. SA187]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKNTGETKEQTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGGNQFSGGAQSRPQQPSSA
PAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=213131 BMF08_RS07285 WP_072570201.1 1516527..1517060(+) (ssb) [Enterobacter sp. SA187]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTCGCCAACATTACGCTGGCGACCTCCGAATCCTGGCGTGATAAAAACACCGGTGAGACTAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAATCGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTGTATATC
GAAGGTTCCCTGCGTACCCGTAAGTGGACCGATCAGAGCGGTCAGGAACGCTACACCACTGAAATCAACGTTCCGCAGAT
TGGCGGCGTAATGCAGATGCTGGGTGGACGTCAGGGTGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGCTGGG
GTCAGCCTCAGCAACCGCAGGGCGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAACCGTCTTCAGCA
CCGGCGCAGTCTAACGAACCGCCGATGGATTTTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.626

100

0.757
  ssb Glaesserella parasuis strain SC1401

58.919

100

0.616
  ssb Neisseria meningitidis MC58

46.893

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.469

Multiple sequence alignment