Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BV494_RS18695 | Genome accession | NZ_CP019062 |
| Coordinates | 4049777..4050322 (+) | Length | 181 a.a. |
| NCBI ID | WP_104924188.1 | Uniprot ID | A0A2L1UV23 |
| Organism | Rahnella sikkimica strain ERMR1:05 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4044777..4055322
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV494_RS18685 (BV494_18655) | - | 4045329..4046510 (+) | 1182 | WP_104924186.1 | alpha/beta hydrolase-fold protein | - |
| BV494_RS18690 (BV494_18660) | uvrA | 4046574..4049429 (-) | 2856 | WP_104924187.1 | excinuclease ABC subunit UvrA | - |
| BV494_RS18695 (BV494_18665) | ssb | 4049777..4050322 (+) | 546 | WP_104924188.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| BV494_RS18700 (BV494_18670) | - | 4050409..4051827 (-) | 1419 | WP_104924189.1 | amidohydrolase family protein | - |
| BV494_RS18705 (BV494_18675) | - | 4051924..4052778 (-) | 855 | WP_104924190.1 | LysR family transcriptional regulator | - |
| BV494_RS18710 (BV494_18680) | hpxO | 4053014..4054171 (+) | 1158 | WP_104924191.1 | FAD-dependent urate hydroxylase HpxO | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 19065.11 Da Isoelectric Point: 5.2456
>NTDB_id=212921 BV494_RS18695 WP_104924188.1 4049777..4050322(+) (ssb) [Rahnella sikkimica strain ERMR1:05]
MASRGVNKVILVGNLGQDPEIRYMPNGGAVANMTLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQAGVEKYTTEIVVNVGGTMQMLGGRTGGGAPASGGQASAGGGQQGGWGQPQQPQGGNQFSGGQQARPAA
QNNAPAQSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEIRYMPNGGAVANMTLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGALQTRKWTDQAGVEKYTTEIVVNVGGTMQMLGGRTGGGAPASGGQASAGGGQQGGWGQPQQPQGGNQFSGGQQARPAA
QNNAPAQSNEPPMDFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=212921 BV494_RS18695 WP_104924188.1 4049777..4050322(+) (ssb) [Rahnella sikkimica strain ERMR1:05]
ATGGCCAGCAGAGGCGTAAACAAAGTTATTCTCGTCGGTAATCTCGGACAAGATCCAGAGATCCGCTACATGCCAAACGG
CGGCGCCGTTGCCAACATGACACTGGCAACCTCCGAAAGCTGGCGTGACAAAGCCACCGGCGAGCAGAAAGAGAAAACAG
AATGGCACCGCGTTGTGCTGTTCGGCAAATTAGCCGAAGTTGCCGGTGAATACCTGAAAAAGGGGTCACAGGTTTATATC
GAAGGTGCACTGCAAACCCGTAAATGGACCGATCAGGCTGGCGTAGAAAAATACACCACCGAAATCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGCGGCCGTACCGGCGGCGGCGCACCAGCAAGTGGCGGTCAGGCATCAGCAGGCGGCGGCC
AGCAAGGCGGTTGGGGTCAGCCTCAGCAGCCACAAGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCTCGTCCGGCTGCG
CAAAACAACGCGCCAGCACAGAGCAACGAACCCCCAATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTTATTCTCGTCGGTAATCTCGGACAAGATCCAGAGATCCGCTACATGCCAAACGG
CGGCGCCGTTGCCAACATGACACTGGCAACCTCCGAAAGCTGGCGTGACAAAGCCACCGGCGAGCAGAAAGAGAAAACAG
AATGGCACCGCGTTGTGCTGTTCGGCAAATTAGCCGAAGTTGCCGGTGAATACCTGAAAAAGGGGTCACAGGTTTATATC
GAAGGTGCACTGCAAACCCGTAAATGGACCGATCAGGCTGGCGTAGAAAAATACACCACCGAAATCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGCGGCCGTACCGGCGGCGGCGCACCAGCAAGTGGCGGTCAGGCATCAGCAGGCGGCGGCC
AGCAAGGCGGTTGGGGTCAGCCTCAGCAGCCACAAGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCTCGTCCGGCTGCG
CAAAACAACGCGCCAGCACAGAGCAACGAACCCCCAATGGATTTCGACGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
71.038 |
100 |
0.718 |
| ssb | Glaesserella parasuis strain SC1401 |
55.263 |
100 |
0.58 |
| ssb | Neisseria meningitidis MC58 |
47.753 |
98.343 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
47.753 |
98.343 |
0.47 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
37.079 |
98.343 |
0.365 |