Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BHT10_RS13160 Genome accession   NZ_CP019042
Coordinates   2542399..2543985 (+) Length   528 a.a.
NCBI ID   WP_004530962.1    Uniprot ID   -
Organism   Burkholderia pseudomallei strain 14M0960418     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2537399..2548985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHT10_RS13140 (BHT10_13005) gshA 2538065..2539354 (-) 1290 WP_004522914.1 glutamate--cysteine ligase -
  BHT10_RS13145 (BHT10_13015) - 2539768..2541270 (-) 1503 WP_004526016.1 ammonium transporter -
  BHT10_RS13150 (BHT10_13020) - 2541303..2541641 (-) 339 WP_004198020.1 P-II family nitrogen regulator -
  BHT10_RS13155 (BHT10_13025) - 2542010..2542261 (+) 252 WP_004198021.1 accessory factor UbiK family protein -
  BHT10_RS13160 (BHT10_13030) comM 2542399..2543985 (+) 1587 WP_004530962.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BHT10_RS13170 (BHT10_13040) - 2544400..2544864 (-) 465 WP_004185200.1 GNAT family N-acetyltransferase -
  BHT10_RS39750 (BHT10_13045) - 2545054..2545242 (+) 189 WP_004198025.1 hypothetical protein -
  BHT10_RS13180 (BHT10_13050) - 2545361..2546140 (+) 780 WP_004535336.1 thioesterase II family protein -
  BHT10_RS13190 (BHT10_13060) - 2546827..2547636 (-) 810 WP_004530963.1 hypothetical protein -
  BHT10_RS13195 (BHT10_13065) - 2547710..2548246 (+) 537 WP_004198028.1 peroxiredoxin family protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 55438.32 Da        Isoelectric Point: 7.4051

>NTDB_id=212843 BHT10_RS13160 WP_004530962.1 2542399..2543985(+) (comM) [Burkholderia pseudomallei strain 14M0960418]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATAPNAAELY
LPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLA
HLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKL
SGPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
GERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFAPA

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=212843 BHT10_RS13160 WP_004530962.1 2542399..2543985(+) (comM) [Burkholderia pseudomallei strain 14M0960418]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGTGCGCCGGAAGTCACCGTCGAAGTCCATCTCGCCAA
CGGTCTGCCGTCGTTCTCGATCGTCGGGCTGCCCGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGGTTCGAGTTTCCCGTGCGGCGCATCACCGTCAACCTCGCGCCGGCCGATTTGCCGAAGGAGTCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCGAGCGGCCAGCTTCCGGCCGGCGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGCTCACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCACGGCGCGCGGCCAGC
AGGCGGACGACGACGGCTCGCCCGCGCAAGCCGAATCGCCGCCCGCGCGGGCGACGGCGCCGAACGCCGCCGAGCTCTAC
CTGCCGCTGCCGAGCGCGGCCGAGGCGGCGCTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGATCTGCCCGCGCTGTG
CGCGCACCTCGCCGACACGCCGGACGGGCGGCTCGCCCCCGTCGCCGCGCCCCGGCTCGACGCGCTCCCCGCCGCAGCGA
CGGCCGATCTCGCCGATGTGATCGGCCAGGCGGGCGCGAAGCGCGCGCTCGAAGTCGCCGCCGCGGGCGGCCACCACATG
CTGATGATCGGGCCGCCGGGCGCGGGCAAATCGATGCTCGCCGCGCGCCTGCCCGCCCTCTTGCCGCCGCTCACCGATGA
CGAGGCACTGACGTCGGCCGCGATCCTGTCGTCGAGCCGCGCGGGCTTCTCGCCCGCTCAATGGCGGCGGCGCCCGTTTC
GCGCGCCGCATCACTCGTCGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCGGGCGAGATCACGCTCGCA
CACCTGGGCGTGCTGTTCCTCGACGAGCTGCCGGAATTCGACCGGCACGTGCTCGAGACGCTGCGCGAGCCGCTCGAGGC
CGGCCGCATCACGATCTCGCGCGCCGCGCTGCAGGCGGATTTTCCGGCCGCGTGCCAACTGATCGCCGCGATGAATCCGT
GCCCGTGCGGCTGGCGCGGCGACCCGGGCGGCCGCTGCCGCTGCTCGCCCGACATCGCCGCGCGCTATCTGCGCAAGCTG
TCCGGGCCGCTCCTCGACCGGATCGACATCCAGATCGAGATTCCCGCGCTCACGCCCGCCGAGCTGGCCGAGCGGCCGGC
GGCCGCCGGCGAATCGAGCGAAACCGTGGCCGCGCGCGTCGCGCTCGCGCGCGAGCGGCAATTCGCGAGGCAGCGCAAGA
CCAACCACATGCTGACGGGCCGCGAGACCGATACGCTCTGCCGCCCGGACAGCGCGGGCGAGACGCTGCTGCGCGACGCG
GGCGAGCGGTTCCGCTGGTCGGCGCGCGCGTACTACCGCGTGCTGAAGGTCGCGCGGACGATCGCGGACCTCGCGGGCGA
CGACGCGCCGAGCGCCGCGCATATCGCCGAGGCGATCCGGTATCGACGGGCGTTCGCGCCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-421)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.237

99.242

0.489
  comM Vibrio campbellii strain DS40M4

47.51

98.864

0.47
  comM Haemophilus influenzae Rd KW20

47.036

99.053

0.466
  comM Legionella pneumophila str. Paris

46.476

99.432

0.462
  comM Legionella pneumophila strain ERS1305867

46.476

99.432

0.462
  comM Glaesserella parasuis strain SC1401

46.552

98.864

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.967

98.295

0.422

Multiple sequence alignment