Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVL33_RS00065 Genome accession   NZ_CP019041
Coordinates   11311..12798 (+) Length   495 a.a.
NCBI ID   WP_075696861.1    Uniprot ID   -
Organism   Acinetobacter junii strain 65     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6311..17798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS00040 (BVL33_00040) ribD 7172..8272 (-) 1101 WP_075695869.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  BVL33_RS00045 (BVL33_00045) nrdR 8285..8749 (-) 465 WP_004957298.1 transcriptional regulator NrdR -
  BVL33_RS00050 (BVL33_00050) - 8920..10332 (-) 1413 WP_075695870.1 ammonium transporter -
  BVL33_RS00055 (BVL33_00055) glnK 10400..10738 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  BVL33_RS00060 (BVL33_00060) - 11014..11241 (+) 228 WP_004917059.1 accessory factor UbiK family protein -
  BVL33_RS00065 (BVL33_00065) comM 11311..12798 (+) 1488 WP_075696861.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVL33_RS00070 (BVL33_00070) - 12834..13622 (-) 789 WP_075695871.1 TorF family putative porin -
  BVL33_RS00075 (BVL33_00075) - 13968..14738 (-) 771 WP_005403516.1 TorF family putative porin -
  BVL33_RS00080 (BVL33_00080) - 15479..16804 (+) 1326 WP_075695872.1 OprD family outer membrane porin -
  BVL33_RS00085 (BVL33_00085) ppa 16909..17436 (-) 528 WP_004957263.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54359.99 Da        Isoelectric Point: 7.7512

>NTDB_id=212792 BVL33_RS00065 WP_075696861.1 11311..12798(+) (comM) [Acinetobacter junii strain 65]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEGFEFIGELALDGHLRPTSGALTIAMACQQAKHHLVLPESNVDEANQLEDFQVYPAKHL
QDVCAHFSGSSQIKAAPQRSISSLSQYQYDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHHFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHRGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPENIQRYQNRISGPLLDRIDLHIDVPPLQAQELQDQKPSE
NSETVRQRVIKAYQQQIKRQQCLNQALSPQFLDQHARLDEGSAKIIEIAQQRLNLSARAYHRVLRVARTIADLAESEMIS
SSHLTEALSYRGSNS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=212792 BVL33_RS00065 WP_075696861.1 11311..12798(+) (comM) [Acinetobacter junii strain 65]
ATGTCTTTTGCAAAAATTTATACAAGGGGATTATTGGGGCTACATGCCCCTCAAATCGAGGTCGAAGTTCATATTAGTTC
TGGCCTACCCTCTTTAACTATCGTGGGTTTACCTGAGGCAGCAGTTCGAGAAAGTAAAGATCGCGTTCGATCCGCAATAA
TTAATAGTGGTTTTCTTTTCCCAACCAAACGTTTAACCATCAATTTAGCACCTGCAGACTTGCCCAAAGATGGGTCACGA
CTTGACCTGCCAATTGCATTGGGGATTTTAATCGCATCAGGTCAGCTTCCTGAAAATTGTACCGAAGGATTTGAATTTAT
TGGTGAACTTGCTTTGGATGGTCATTTACGTCCAACTTCAGGGGCATTAACTATTGCTATGGCTTGTCAGCAAGCTAAGC
ATCATTTAGTTCTTCCTGAATCAAATGTGGACGAGGCAAATCAACTAGAAGACTTTCAAGTTTATCCTGCCAAACATTTA
CAAGATGTATGTGCACATTTTTCGGGCAGTAGCCAAATAAAAGCCGCACCACAACGATCTATTTCATCATTATCACAATA
TCAATACGATCTTGCCGATGTTAAAGGTCAACTTCGTCCTCGCCGAGCATTAGAAATTGCGGCTGCAGGAGGTCATTCAT
TACTCTTTAAGGGACCACCTGGCACTGGAAAAACATTACTTGCATCTCGACTGCCTTCAATTTTACCCCCTTTGAATGCT
CAAGAAAATTTAGAGGTTGCTAGTATCTATTCCGTAGCAAATGCTCAACATCATTTCGGTCAGCGTCCTTTTCGTGCACC
TCACCATACAGCATCTGCGATCGCTTTGGTTGGTGGAGGCTCTCAACCAAAACCTGGAGAAATTACGCTTGCTCATCGCG
GCGTTTTGTTTTTAGATGAATTACCTGAATTCGACCGCAAAGTGCTTGAAGTTCTGCGCCAACCTTTAGAGTCTAAAGAA
ATCGTAATTTCTCGCGCGGCGAGACAAATGACCTTCCCTGCAAATTTTCAGTTTATCGCTGCAATGAATCCATGCCCTTG
TGGATATGCATTTAATCAAGATAGTCGTTGTCAGTGTTCTCCTGAAAATATTCAGCGTTATCAAAATCGAATTTCAGGTC
CACTTTTGGATCGAATTGATCTGCATATCGATGTTCCACCCTTGCAAGCTCAAGAGCTACAAGACCAAAAACCCTCAGAA
AACTCTGAAACTGTTCGTCAACGAGTGATAAAAGCATATCAGCAACAAATCAAAAGACAGCAATGCTTAAACCAAGCGCT
TTCACCTCAATTTTTGGATCAACATGCTCGTTTAGACGAGGGATCTGCAAAAATTATTGAAATAGCACAACAAAGATTAA
ATCTTTCTGCCCGTGCTTATCATCGGGTACTTCGCGTTGCAAGAACGATTGCTGACTTAGCTGAGAGTGAGATGATTTCT
AGCTCACATTTAACAGAAGCCTTGTCTTATCGAGGTAGCAATAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.606

100

0.519
  comM Glaesserella parasuis strain SC1401

50.4

100

0.509
  comM Vibrio campbellii strain DS40M4

49.899

100

0.499
  comM Haemophilus influenzae Rd KW20

49.299

100

0.497
  comM Legionella pneumophila str. Paris

48.193

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.193

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.465

Multiple sequence alignment