Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVG84_RS20775 Genome accession   NZ_CP018930
Coordinates   4357397..4358920 (+) Length   507 a.a.
NCBI ID   WP_060448495.1    Uniprot ID   -
Organism   Serratia marcescens strain UMH12     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4352397..4363920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG84_RS20750 (BVG84_20805) - 4352598..4353524 (-) 927 WP_016930475.1 branched-chain amino acid transaminase -
  BVG84_RS20755 (BVG84_20810) ilvM 4353548..4353805 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  BVG84_RS20760 (BVG84_20815) ilvG 4353802..4355448 (-) 1647 WP_060448494.1 acetolactate synthase 2 catalytic subunit -
  BVG84_RS20765 (BVG84_20820) ilvL 4355591..4355689 (-) 99 WP_013814970.1 ilv operon leader peptide -
  BVG84_RS20770 (BVG84_20825) - 4355823..4357055 (-) 1233 WP_025304644.1 MFS transporter -
  BVG84_RS20775 (BVG84_20830) comM 4357397..4358920 (+) 1524 WP_060448495.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVG84_RS20780 (BVG84_20835) - 4358948..4359286 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  BVG84_RS20785 (BVG84_20840) hdfR 4359406..4360233 (+) 828 WP_089180501.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54477.72 Da        Isoelectric Point: 7.9462

>NTDB_id=212066 BVG84_RS20775 WP_060448495.1 4357397..4358920(+) (comM) [Serratia marcescens strain UMH12]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSQSHTAQHL
LEVCAFLLGQGELPVAVTPPAAGNAYENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAIASLQHPVLSALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSQRKTH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLETTLNALGLSVRAWQRILKVARTLADLAGDTE
IDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=212066 BVG84_RS20775 WP_060448495.1 4357397..4358920(+) (comM) [Serratia marcescens strain UMH12]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGTCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCACCGGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAACTGCCCCTCGCACCGTTGGCACGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCCGGCGCACTGCGTGCGGTCAGAGGCGCCATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GACAATTGATCCTGTCGACGGACAACGCCGCCGAGGTCGGCCTGATCGCACAGTCACAATCCCATACCGCCCAACACCTG
TTGGAGGTCTGTGCTTTTTTACTCGGCCAGGGCGAACTGCCGGTGGCCGTCACACCCCCCGCAGCCGGCAATGCGTACGA
AAACGCCGATCTGCGCGACATCATCGGCCAGGAGCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACAGGCAAAACCATGCTGGCCAGCCGACTGACGGGCTTACTGCCGCCGCTGACGGAG
CCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAACACCCTGTTCTGAGCGCTCTGCCATGGCGCCAGAGGCCGTT
TCGCGCGCCGCATCACAGCGCATCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGTCCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTACCGGAATTCGAGCGTAAGGTCCTGGATGCGCTGCGCGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCTGCCAGAGTACAGTTGATCGCGGCAATGAACCC
CAGCCCGACAGGGCATTATCAGGGGTTGCACAACCGCGCCTCGCCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTACCGCCGGGTACGCTCAGCCAGCGGAAAACGCAT
GGGGAAAGCAGTGAGCAGGTGCGGAAACGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGTGAAGTGGAACGTGATTGTGTTCTGCAGGCGGCGGACGCCGAGTTTTTGGAGACGACATTAAACG
CGCTGGGGTTATCGGTACGCGCCTGGCAGCGCATCCTGAAAGTGGCTCGCACGCTGGCGGATTTGGCGGGAGATACTGAG
ATCGACAGGCGCCACCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGTTGTTACAGCTGCACCGTAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.403

99.803

0.663
  comM Glaesserella parasuis strain SC1401

65.815

100

0.661
  comM Vibrio cholerae strain A1552

65.737

99.014

0.651
  comM Vibrio campbellii strain DS40M4

64.741

99.014

0.641
  comM Legionella pneumophila str. Paris

50.905

98.028

0.499
  comM Legionella pneumophila strain ERS1305867

50.905

98.028

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

99.803

0.458

Multiple sequence alignment