Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CS032_RS25575 Genome accession   NZ_CP024256
Coordinates   4586713..4587450 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ATCC 43886     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4581713..4592450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS032_RS25560 clpC 4582167..4584740 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CS032_RS25565 yfiH 4584870..4585601 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CS032_RS25570 rluD 4585598..4586578 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CS032_RS25575 comL 4586713..4587450 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CS032_RS25585 raiA 4587721..4588062 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CS032_RS27575 pheL 4588166..4588213 (+) 48 WP_010723158.1 phe operon leader peptide -
  CS032_RS25590 pheA 4588312..4589472 (+) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  CS032_RS25595 tyrA 4589515..4590636 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CS032_RS25600 aroF 4590647..4591717 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CS032_RS25605 yfiL 4591927..4592292 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=212066 CS032_RS25575 WP_000197686.1 4586713..4587450(+) (comL) [Escherichia coli strain ATCC 43886]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=212066 CS032_RS25575 WP_000197686.1 4586713..4587450(+) (comL) [Escherichia coli strain ATCC 43886]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment