Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVG84_RS19295 Genome accession   NZ_CP018930
Coordinates   4038230..4038763 (-) Length   177 a.a.
NCBI ID   WP_060448016.1    Uniprot ID   -
Organism   Serratia marcescens strain UMH12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4033230..4043763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG84_RS19260 (BVG84_19310) - 4033572..4033979 (-) 408 WP_025304432.1 VOC family protein -
  BVG84_RS19265 (BVG84_19315) - 4034027..4034695 (-) 669 WP_043139706.1 glutathione S-transferase family protein -
  BVG84_RS19270 (BVG84_19320) - 4034692..4035135 (-) 444 WP_025304434.1 lipocalin-like domain-containing protein -
  BVG84_RS19275 (BVG84_19325) - 4035331..4035591 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  BVG84_RS19280 (BVG84_19330) - 4035741..4036490 (+) 750 WP_060448018.1 3-oxoacyl-ACP reductase family protein -
  BVG84_RS19285 (BVG84_19335) - 4036753..4036965 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  BVG84_RS19290 (BVG84_19340) - 4037079..4038143 (+) 1065 WP_230203406.1 cyclase family protein -
  BVG84_RS19295 (BVG84_19345) ssb 4038230..4038763 (-) 534 WP_060448016.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BVG84_RS19300 (BVG84_19350) uvrA 4039041..4041869 (+) 2829 WP_060448015.1 excinuclease ABC subunit UvrA -
  BVG84_RS19305 (BVG84_19355) - 4042099..4043151 (+) 1053 WP_025304440.1 NAD(P)-dependent alcohol dehydrogenase -
  BVG84_RS19310 (BVG84_19360) maa 4043183..4043740 (-) 558 WP_025304441.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18765.73 Da        Isoelectric Point: 5.2456

>NTDB_id=212064 BVG84_RS19295 WP_060448016.1 4038230..4038763(-) (ssb) [Serratia marcescens strain UMH12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=212064 BVG84_RS19295 WP_060448016.1 4038230..4038763(-) (ssb) [Serratia marcescens strain UMH12]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAAAAGACCG
AGTGGCACCGCGTCGTACTGTTCGGCAAACTGGCTGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGACCGATCAGGCCGGCGTGGAAAAATACACCACCGAAGTGGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.626

100

0.757
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.599
  ssb Neisseria meningitidis MC58

46.524

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362

Multiple sequence alignment