Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VC_RS09245 Genome accession   NC_002505
Coordinates   2066452..2066763 (-) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae O1 biovar El Tor str. N16961     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2061452..2071763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC_RS09220 (VC1912) lapB 2061646..2062815 (-) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -
  VC_RS09225 (VC1913) - 2062827..2063108 (-) 282 WP_000691492.1 LapA family protein -
  VC_RS09230 (VC1914) ihfB 2063247..2063525 (-) 279 WP_000167341.1 integration host factor subunit beta -
  VC_RS09235 (VC1915) rpsA 2063813..2065483 (-) 1671 WP_000140318.1 30S ribosomal protein S1 -
  VC_RS09240 (VC1916) cmk 2065592..2066269 (-) 678 WP_000094752.1 (d)CMP kinase -
  VC_RS09245 (VC1917) comEA 2066452..2066763 (-) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  VC_RS09250 (VC1918) ppiD 2066898..2068757 (-) 1860 WP_000969331.1 peptidylprolyl isomerase -
  VC_RS09255 (VC1919) - 2068910..2069182 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  VC_RS09260 (VC1920) lon 2069366..2071726 (-) 2361 WP_001047611.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=21205 VC_RS09245 WP_001166105.1 2066452..2066763(-) (comEA) [Vibrio cholerae O1 biovar El Tor str. N16961]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=21205 VC_RS09245 WP_001166105.1 2066452..2066763(-) (comEA) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437