Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVG89_RS20460 Genome accession   NZ_CP018929
Coordinates   4318137..4319660 (+) Length   507 a.a.
NCBI ID   WP_089181441.1    Uniprot ID   -
Organism   Serratia marcescens strain UMH11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4313137..4324660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG89_RS20435 (BVG89_20470) - 4313338..4314264 (-) 927 WP_016930475.1 branched-chain amino acid transaminase -
  BVG89_RS20440 (BVG89_20475) ilvM 4314288..4314545 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  BVG89_RS20445 (BVG89_20480) ilvG 4314542..4316188 (-) 1647 WP_089181440.1 acetolactate synthase 2 catalytic subunit -
  BVG89_RS20450 (BVG89_20485) ilvL 4316331..4316429 (-) 99 WP_013814970.1 ilv operon leader peptide -
  BVG89_RS20455 (BVG89_20490) - 4316563..4317795 (-) 1233 WP_025304644.1 MFS transporter -
  BVG89_RS20460 (BVG89_20495) comM 4318137..4319660 (+) 1524 WP_089181441.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVG89_RS20465 (BVG89_20500) - 4319688..4320026 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  BVG89_RS20470 (BVG89_20505) hdfR 4320146..4320973 (+) 828 WP_089181442.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54435.72 Da        Isoelectric Point: 7.3216

>NTDB_id=212043 BVG89_RS20460 WP_089181441.1 4318137..4319660(+) (comM) [Serratia marcescens strain UMH11]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSQSHTAQHL
LEVCAFLLGQGELPVAVTPPAAGNAYENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAIASLQHPVLSALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSKRQTQ
GESSELVQERVRLARARQLERAGKVNALLSNREVERDCVLQPADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDTE
IDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=212043 BVG89_RS20460 WP_089181441.1 4318137..4319660(+) (comM) [Serratia marcescens strain UMH11]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAAGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGTCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCACCGGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAACTGCCCCTCGCACCGTTGGCACGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCCGGCGCACTGCGTGCGGTCAGAGGCGCCATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GACAATTGATCCTGTCGACGGACAACGCCGCCGAGGTCGGCCTGATCGCACAGTCACAATCCCATACCGCCCAACACCTG
TTGGAGGTCTGTGCTTTTTTACTCGGCCAGGGCGAACTGCCGGTGGCCGTCACACCCCCCGCAGCCGGCAATGCGTACGA
AAACGCCGATCTGCGCGACATCATCGGCCAGGAGCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACAGGCAAAACCATGCTGGCCAGCCGACTGACGGGCTTACTGCCGCCGCTGACGGAG
CCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAACACCCTGTTCTGAGCGCTCTGCCATGGCGCCAGAGGCCGTT
TCGCGCGCCGCATCACAGCGCATCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGTCCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTACCGGAATTCGAGCGTAAGGTCCTGGATGCGCTGCGCGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCTGCCAGAGTACAGTTGATCGCGGCAATGAACCC
CAGCCCGACAGGGCATTATCAGGGGTTGCACAACCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGTTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTGCCGCCGGGTACGCTCAGTAAGCGGCAAACGCAG
GGAGAAAGCAGTGAGCTGGTTCAGGAAAGAGTGCGACTGGCACGCGCCCGCCAGCTCGAACGCGCCGGTAAAGTCAATGC
GCTGTTGAGCAACCGCGAAGTAGAACGGGATTGCGTGTTGCAGCCGGCAGACGCCGAGTTTTTGGAAGCGACATTAAACG
CGTTAGGGCTATCGGTACGCGCCTGGCAGCGCATCCTGAAAGTGGCTCGCACGCTGGCGGATTTGGCGGGAGATACTGAG
ATCGACAGGCGCCACCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGTTGTTACAGCTGCACCGTAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.206

99.803

0.661
  comM Glaesserella parasuis strain SC1401

65.422

100

0.657
  comM Vibrio cholerae strain A1552

65.538

99.014

0.649
  comM Vibrio campbellii strain DS40M4

64.741

99.014

0.641
  comM Legionella pneumophila str. Paris

50.905

98.028

0.499
  comM Legionella pneumophila strain ERS1305867

50.905

98.028

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.652

99.803

0.456

Multiple sequence alignment