Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVG89_RS18975 Genome accession   NZ_CP018929
Coordinates   3996939..3997472 (-) Length   177 a.a.
NCBI ID   WP_060448016.1    Uniprot ID   -
Organism   Serratia marcescens strain UMH11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3991939..4002472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG89_RS18940 (BVG89_18970) - 3992281..3992688 (-) 408 WP_025304432.1 VOC family protein -
  BVG89_RS18945 (BVG89_18975) - 3992736..3993404 (-) 669 WP_043139706.1 glutathione S-transferase family protein -
  BVG89_RS18950 (BVG89_18980) - 3993401..3993844 (-) 444 WP_060434688.1 lipocalin-like domain-containing protein -
  BVG89_RS18955 (BVG89_18985) - 3994040..3994300 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  BVG89_RS18960 (BVG89_18990) - 3994450..3995199 (+) 750 WP_025304436.1 3-oxoacyl-ACP reductase family protein -
  BVG89_RS18965 (BVG89_18995) - 3995463..3995675 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  BVG89_RS18970 (BVG89_19000) - 3995897..3996853 (+) 957 WP_089181382.1 cyclase family protein -
  BVG89_RS18975 (BVG89_19005) ssb 3996939..3997472 (-) 534 WP_060448016.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BVG89_RS18980 (BVG89_19010) uvrA 3997750..4000578 (+) 2829 WP_060434697.1 excinuclease ABC subunit UvrA -
  BVG89_RS18985 (BVG89_19015) - 4000808..4001860 (+) 1053 WP_043139692.1 NAD(P)-dependent alcohol dehydrogenase -
  BVG89_RS18990 (BVG89_19020) maa 4001892..4002449 (-) 558 WP_025304441.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18765.73 Da        Isoelectric Point: 5.2456

>NTDB_id=212041 BVG89_RS18975 WP_060448016.1 3996939..3997472(-) (ssb) [Serratia marcescens strain UMH11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=212041 BVG89_RS18975 WP_060448016.1 3996939..3997472(-) (ssb) [Serratia marcescens strain UMH11]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAAAAGACCG
AGTGGCACCGCGTCGTACTGTTCGGCAAACTGGCTGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGACCGATCAGGCCGGCGTGGAAAAATACACCACCGAAGTGGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.626

100

0.757
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.599
  ssb Neisseria meningitidis MC58

46.524

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362

Multiple sequence alignment