Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVG93_RS22630 Genome accession   NZ_CP018926
Coordinates   4727345..4728868 (-) Length   507 a.a.
NCBI ID   WP_089192418.1    Uniprot ID   A0A9X9C2Z7
Organism   Serratia marcescens strain UMH6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4722345..4733868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG93_RS22620 (BVG93_22645) hdfR 4726031..4726858 (-) 828 WP_089192417.1 HTH-type transcriptional regulator HdfR -
  BVG93_RS22625 (BVG93_22650) - 4726978..4727316 (+) 339 WP_004929946.1 DUF413 domain-containing protein -
  BVG93_RS22630 (BVG93_22655) comM 4727345..4728868 (-) 1524 WP_089192418.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVG93_RS22635 (BVG93_22660) - 4729210..4730442 (+) 1233 WP_033645380.1 MFS transporter -
  BVG93_RS22640 (BVG93_22665) ilvL 4730576..4730674 (+) 99 WP_013814970.1 ilv operon leader peptide -
  BVG93_RS22645 (BVG93_22670) ilvG 4730817..4732463 (+) 1647 WP_089192419.1 acetolactate synthase 2 catalytic subunit -
  BVG93_RS22650 (BVG93_22675) ilvM 4732460..4732717 (+) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  BVG93_RS22655 (BVG93_22680) - 4732741..4733667 (+) 927 WP_033645378.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54514.76 Da        Isoelectric Point: 7.6156

>NTDB_id=211978 BVG93_RS22630 WP_089192418.1 4727345..4728868(-) (comM) [Serratia marcescens strain UMH6]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLVLSTDNAAEVGLIAQSQSHTAQHL
LEVCAFLLGQGELPVAVTPPAADNPHENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAVASLQHPVLTALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPAKVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSKRQTQ
GESSEQVRERVRQARTRQLERAGKINALLNNREVERDCVLQAADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
IGRRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=211978 BVG93_RS22630 WP_089192418.1 4727345..4728868(-) (comM) [Serratia marcescens strain UMH6]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTAGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTTGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGCCGCATCACCGTCAATTTGGCACCGGCCGATCTGCCGAAAGAAGGCGGGCGC
TACGATCTGCCGATTGCGCTGGCGATCCTCGCCGCCTCCGAGCAACTGCCCCTCGCCCCGTTGGCACGCTACGAGTTTCT
TGGCGAACTGGCGCTGTCCGGCGCGCTGCGCGCGGTCAGAGGCGCCATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GACAATTGGTCCTCTCCACGGACAACGCCGCCGAGGTCGGCCTGATCGCGCAGTCACAATCCCATACTGCCCAACACCTG
TTGGAGGTCTGTGCCTTTTTGCTCGGTCAGGGCGAGCTGCCGGTGGCCGTCACGCCTCCCGCGGCAGACAACCCGCATGA
AAACGCCGATCTGCGCGACATCATCGGCCAAGAGCAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCAGCCGACTGACTGGCTTACTGCCGCCGCTAACGGAA
CCTGAGGCGCTGGAAAGCCTGGCGGTCGCCAGCTTGCAGCATCCTGTTCTCACCGCTTTGCCATGGCGCCAGAGGCCATT
TCGCGCACCGCATCACAGCGCATCGATGGCGGCGTTGGTCGGCGGCGGCTCACTGCCGCGCCCGGGTGAGATATCTATGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTCGAGCGTAAGGTGCTGGATGCGCTGCGTGAACCGCTGGAA
TCCGGCGAGATCGTGATTTCACGTGCCAACGCCAAGGTCTGCTTCCCGGCCAAGGTGCAATTGATCGCGGCGATGAATCC
CAGCCCAACCGGGCATTACCAGGGCATGCATAATCGCGCCTCGCCGCAGCAGGTGCTGCGCTACCTGGCCCGGCTGTCAG
GGCCTTTTCTCGATCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTACCTCCAGGCACGCTCAGTAAGCGGCAAACTCAG
GGAGAAAGCAGCGAGCAGGTGCGGGAAAGAGTGCGACAGGCACGCACCCGGCAGCTCGAACGCGCCGGTAAAATCAACGC
GCTGTTAAACAACCGTGAAGTGGAACGGGATTGCGTGTTGCAGGCGGCAGACGCCGAGTTTTTGGAAGCGACATTAAACG
CGTTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGGGATGCCGAG
ATCGGCAGGCGCCACCTCAGCGAAGCGCTGAGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.601

99.803

0.665
  comM Glaesserella parasuis strain SC1401

66.272

100

0.663
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.741

99.014

0.641
  comM Legionella pneumophila str. Paris

51.503

98.422

0.507
  comM Legionella pneumophila strain ERS1305867

51.503

98.422

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.562

100

0.456

Multiple sequence alignment