Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BVG93_RS19390 Genome accession   NZ_CP018926
Coordinates   4043074..4043604 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain UMH6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4038074..4048604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG93_RS19355 (BVG93_19375) - 4038411..4038818 (-) 408 WP_015379207.1 VOC family protein -
  BVG93_RS19360 (BVG93_19380) - 4038866..4039534 (-) 669 WP_033644433.1 glutathione S-transferase family protein -
  BVG93_RS19365 (BVG93_19385) - 4039531..4039974 (-) 444 WP_033644432.1 lipocalin-like domain-containing protein -
  BVG93_RS19370 (BVG93_19390) - 4040170..4040430 (+) 261 WP_072626882.1 YdgH/BhsA/McbA-like domain containing protein -
  BVG93_RS19375 (BVG93_19395) - 4040581..4041330 (+) 750 WP_046687892.1 3-oxoacyl-ACP reductase family protein -
  BVG93_RS19380 (BVG93_19400) - 4041594..4041806 (+) 213 WP_033644427.1 DUF1471 domain-containing protein -
  BVG93_RS19385 (BVG93_19405) - 4042032..4042988 (+) 957 WP_047573539.1 cyclase family protein -
  BVG93_RS19390 (BVG93_19410) ssb 4043074..4043604 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  BVG93_RS19395 (BVG93_19415) uvrA 4043882..4046710 (+) 2829 WP_033644422.1 excinuclease ABC subunit UvrA -
  BVG93_RS25065 - 4046760..4046960 (-) 201 WP_145957780.1 hypothetical protein -
  BVG93_RS19400 (BVG93_19420) - 4047030..4047845 (+) 816 WP_233501945.1 MipA/OmpV family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=211970 BVG93_RS19390 WP_004936793.1 4043074..4043604(-) (ssb) [Serratia marcescens strain UMH6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=211970 BVG93_RS19390 WP_004936793.1 4043074..4043604(-) (ssb) [Serratia marcescens strain UMH6]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAAGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCTGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGTGGCCAGGATCGTTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAACAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment