Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVG97_RS21435 Genome accession   NZ_CP018917
Coordinates   4454604..4456127 (+) Length   507 a.a.
NCBI ID   WP_089186586.1    Uniprot ID   -
Organism   Serratia marcescens strain UMH5     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4449604..4461127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG97_RS21410 (BVG97_21415) - 4449804..4450730 (-) 927 WP_084827061.1 branched-chain amino acid transaminase -
  BVG97_RS21415 (BVG97_21420) ilvM 4450754..4451011 (-) 258 WP_038874702.1 acetolactate synthase 2 small subunit -
  BVG97_RS21420 (BVG97_21425) ilvG 4451008..4452654 (-) 1647 WP_089186584.1 acetolactate synthase 2 catalytic subunit -
  BVG97_RS21425 (BVG97_21430) ilvL 4452797..4452895 (-) 99 WP_013814970.1 ilv operon leader peptide -
  BVG97_RS21430 (BVG97_21435) - 4453029..4454261 (-) 1233 WP_089186585.1 MFS transporter -
  BVG97_RS21435 (BVG97_21440) comM 4454604..4456127 (+) 1524 WP_089186586.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVG97_RS21440 (BVG97_21445) - 4456156..4456494 (-) 339 WP_048232148.1 DUF413 domain-containing protein -
  BVG97_RS21445 (BVG97_21450) hdfR 4456614..4457441 (+) 828 WP_060425370.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54431.74 Da        Isoelectric Point: 7.8605

>NTDB_id=211854 BVG97_RS21435 WP_089186586.1 4454604..4456127(+) (comM) [Serratia marcescens strain UMH5]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSHSHTARHL
LEVCAFLLGQGELPVAATPPAVDIACDNADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
HEALESLAVASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSQRKTH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
LNRSHLCEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=211854 BVG97_RS21435 WP_089186586.1 4454604..4456127(+) (comM) [Serratia marcescens strain UMH5]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGTCTGCCGGAAACCACGGTGAAAGAGGCGCGCGATCGGGTGCGCAGTGCCCTGA
TCAACAACGGTTTCACCTTTCCTGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGACGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCACTGTCCGGCGCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GGCAACTGATCCTCTCGACGGACAACGCCGCCGAAGTCGGCCTGATTGCGCAGTCGCACTCCCATACCGCCCGGCACCTG
TTGGAAGTCTGTGCCTTTCTGCTCGGCCAGGGCGAGCTGCCGGTGGCGGCCACGCCTCCCGCTGTGGACATCGCCTGCGA
CAACGCCGATCTGCGCGACATCATCGGCCAGGAACAGGCCAAGCGGGCTCTGGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGTTGGCCAGCCGCCTCACGGGCTTGCTGCCGCCGCTCACGGAG
CATGAGGCGCTGGAAAGCCTGGCGGTCGCCAGCTTGCAGCATCATATCCCCGCCGCCCTGCCATGGCGCCAGAGGCCGTT
TCGCGCACCGCATCACAGTGCATCGATGGCGGCGTTGGTCGGCGGCGGCTCACTGCCGCGCCCGGGCGAGATCTCTATGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTACCGGAATTCGAGCGTAAGGTGCTGGATGCACTGCGTGAGCCGCTGGAG
TCCGGCGAGATCGTAATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGTTGATTGCGGCAATGAACCC
CAGCCCGACCGGGCATTATCAGGGGTTACACAATCGCGCCTCGCCGCAGCAGGTATTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTACCGCCGGGTACGCTCAGTCAGCGGAAAACGCAT
GGAGAGAGCAGTGAGCAGGTGCGGAAGCGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGGAAAGTCAACGC
GCTGTTGAGCAACCGCGAAGTGGAACGTGATTGCGTTCTGCAGGCGGCAGACGCCGAGTTTTTGGAGGCAACATTAAACG
CGCTGGGATTATCGGTCCGCGCCTGGCAGCGCATTTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGGGATGCGGAG
CTCAACAGGAGCCACCTCTGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAGCTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.008

99.803

0.659
  comM Glaesserella parasuis strain SC1401

65.551

100

0.657
  comM Vibrio cholerae strain A1552

65.538

99.014

0.649
  comM Vibrio campbellii strain DS40M4

64.343

99.014

0.637
  comM Legionella pneumophila str. Paris

51.004

98.225

0.501
  comM Legionella pneumophila strain ERS1305867

51.004

98.225

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.902

100

0.452

Multiple sequence alignment