Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BVG97_RS19855 | Genome accession | NZ_CP018917 |
| Coordinates | 4120486..4121016 (-) | Length | 176 a.a. |
| NCBI ID | WP_004936793.1 | Uniprot ID | A0AAW6X7L8 |
| Organism | Serratia marcescens strain UMH5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4115486..4126016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVG97_RS19825 (BVG97_19825) | - | 4115810..4117171 (-) | 1362 | WP_004936819.1 | NCS2 family permease | - |
| BVG97_RS19830 (BVG97_19830) | - | 4117504..4117911 (-) | 408 | WP_038874298.1 | VOC family protein | - |
| BVG97_RS19835 (BVG97_19835) | - | 4117959..4118627 (-) | 669 | WP_049201475.1 | glutathione S-transferase family protein | - |
| BVG97_RS19840 (BVG97_19840) | - | 4118624..4119067 (-) | 444 | WP_089186506.1 | lipocalin-like domain-containing protein | - |
| BVG97_RS19845 (BVG97_19845) | - | 4119264..4119524 (+) | 261 | WP_060440954.1 | YdgH/BhsA/McbA-like domain containing protein | - |
| BVG97_RS19850 (BVG97_19850) | - | 4119674..4120423 (+) | 750 | WP_060425175.1 | 3-oxoacyl-ACP reductase family protein | - |
| BVG97_RS19855 (BVG97_19855) | ssb | 4120486..4121016 (-) | 531 | WP_004936793.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| BVG97_RS19860 (BVG97_19860) | uvrA | 4121294..4124122 (+) | 2829 | WP_049201484.1 | excinuclease ABC subunit UvrA | - |
| BVG97_RS19865 (BVG97_19865) | - | 4124452..4125258 (+) | 807 | WP_204276035.1 | MipA/OmpV family protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18808.71 Da Isoelectric Point: 5.2358
>NTDB_id=211852 BVG97_RS19855 WP_004936793.1 4120486..4121016(-) (ssb) [Serratia marcescens strain UMH5]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=211852 BVG97_RS19855 WP_004936793.1 4120486..4121016(-) (ssb) [Serratia marcescens strain UMH5]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGCAAGGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGTGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGCAAGGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGTGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.243 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
59.14 |
100 |
0.625 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.158 |
100 |
0.364 |