Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BVD86_RS16640 Genome accession   NZ_CP018909
Coordinates   3457852..3458661 (+) Length   269 a.a.
NCBI ID   WP_199997172.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3452852..3463661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS16605 - 3453410..3453565 (-) 156 Protein_3225 hypothetical protein -
  BVD86_RS16610 (BVD86_16640) rpoZ 3453604..3453882 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  BVD86_RS16615 (BVD86_16645) gmk 3453955..3454584 (-) 630 WP_002116973.1 guanylate kinase -
  BVD86_RS16620 (BVD86_16650) ispH 3454707..3455657 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BVD86_RS16625 (BVD86_16655) fimU 3455827..3456300 (+) 474 WP_101664436.1 pilus assembly FimT family protein Machinery gene
  BVD86_RS16630 (BVD86_16660) pilV 3456294..3456854 (+) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  BVD86_RS16635 (BVD86_16665) pilW 3456854..3457855 (+) 1002 WP_101664437.1 PilW family protein Machinery gene
  BVD86_RS16640 (BVD86_16670) pilX 3457852..3458661 (+) 810 WP_199997172.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BVD86_RS16645 (BVD86_16675) pilY1 3458673..3462527 (+) 3855 WP_199997171.1 PilC/PilY family type IV pilus protein Machinery gene
  BVD86_RS16650 (BVD86_16680) pilY2 3462538..3463020 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  BVD86_RS16655 (BVD86_16685) pilE 3463017..3463442 (+) 426 WP_101664438.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28629.50 Da        Isoelectric Point: 8.1388

>NTDB_id=211777 BVD86_RS16640 WP_199997172.1 3457852..3458661(+) (pilX) [Acinetobacter pittii strain XJ88]
MTHLIHKSRYKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASHIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=211777 BVD86_RS16640 WP_199997172.1 3457852..3458661(+) (pilX) [Acinetobacter pittii strain XJ88]
ATGACCCATTTAATTCATAAGAGTAGATATAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGTCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTTATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTTGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCCATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCGGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACGCAACGGATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

88.971

100

0.9

Multiple sequence alignment