Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   BVD86_RS16625 Genome accession   NZ_CP018909
Coordinates   3455827..3456300 (+) Length   157 a.a.
NCBI ID   WP_101664436.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3450827..3461300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS16600 (BVD86_16635) spoT 3451289..3453394 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  BVD86_RS16605 - 3453410..3453565 (-) 156 Protein_3225 hypothetical protein -
  BVD86_RS16610 (BVD86_16640) rpoZ 3453604..3453882 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  BVD86_RS16615 (BVD86_16645) gmk 3453955..3454584 (-) 630 WP_002116973.1 guanylate kinase -
  BVD86_RS16620 (BVD86_16650) ispH 3454707..3455657 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BVD86_RS16625 (BVD86_16655) fimU 3455827..3456300 (+) 474 WP_101664436.1 pilus assembly FimT family protein Machinery gene
  BVD86_RS16630 (BVD86_16660) pilV 3456294..3456854 (+) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  BVD86_RS16635 (BVD86_16665) pilW 3456854..3457855 (+) 1002 WP_101664437.1 PilW family protein Machinery gene
  BVD86_RS16640 (BVD86_16670) pilX 3457852..3458661 (+) 810 WP_199997172.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16933.53 Da        Isoelectric Point: 7.7942

>NTDB_id=211774 BVD86_RS16625 WP_101664436.1 3455827..3456300(+) (fimU) [Acinetobacter pittii strain XJ88]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKNFVLTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=211774 BVD86_RS16625 WP_101664436.1 3455827..3456300(+) (fimU) [Acinetobacter pittii strain XJ88]
ATGAGGGGAATTATTCCGCAAGATGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTGT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAGGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAATAGTCTTGAGCTTAAAAATATAGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAACGGGGTGATAACCAATATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAAATTTTGTTTTAACGAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879

Multiple sequence alignment