Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   COG33_RS10020 Genome accession   NZ_CP024240
Coordinates   1873743..1874258 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O114:H49 strain 90-9280     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868743..1879258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG33_RS09995 ygaZ 1869142..1869879 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  COG33_RS10000 ygaH 1869869..1870204 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  COG33_RS10005 emrR 1870295..1870825 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  COG33_RS10010 emrA 1870952..1872124 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  COG33_RS10015 emrB 1872141..1873679 (+) 1539 WP_001356141.1 multidrug efflux MFS transporter permease subunit EmrB -
  COG33_RS10020 luxS 1873743..1874258 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  COG33_RS10025 gshA 1874408..1875964 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  COG33_RS10030 yqaA 1876037..1876465 (-) 429 WP_001287457.1 YqaA family protein -
  COG33_RS10035 yqaB 1876462..1877028 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  COG33_RS10065 csrA 1878486..1878671 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=211774 COG33_RS10020 WP_001130211.1 1873743..1874258(-) (luxS) [Escherichia coli O114:H49 strain 90-9280]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=211774 COG33_RS10020 WP_001130211.1 1873743..1874258(-) (luxS) [Escherichia coli O114:H49 strain 90-9280]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment