Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   BVD86_RS16635 Genome accession   NZ_CP018909
Coordinates   3456854..3457855 (+) Length   333 a.a.
NCBI ID   WP_101664437.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3451854..3462855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS16605 - 3453410..3453565 (-) 156 Protein_3225 hypothetical protein -
  BVD86_RS16610 (BVD86_16640) rpoZ 3453604..3453882 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  BVD86_RS16615 (BVD86_16645) gmk 3453955..3454584 (-) 630 WP_002116973.1 guanylate kinase -
  BVD86_RS16620 (BVD86_16650) ispH 3454707..3455657 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BVD86_RS16625 (BVD86_16655) fimU 3455827..3456300 (+) 474 WP_101664436.1 pilus assembly FimT family protein Machinery gene
  BVD86_RS16630 (BVD86_16660) pilV 3456294..3456854 (+) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  BVD86_RS16635 (BVD86_16665) pilW 3456854..3457855 (+) 1002 WP_101664437.1 PilW family protein Machinery gene
  BVD86_RS16640 (BVD86_16670) pilX 3457852..3458661 (+) 810 WP_199997172.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BVD86_RS16645 (BVD86_16675) pilY1 3458673..3462527 (+) 3855 WP_199997171.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35861.52 Da        Isoelectric Point: 5.9994

>NTDB_id=211776 BVD86_RS16635 WP_101664437.1 3456854..3457855(+) (pilW) [Acinetobacter pittii strain XJ88]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVETNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSDAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQMSVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=211776 BVD86_RS16635 WP_101664437.1 3456854..3457855(+) (pilW) [Acinetobacter pittii strain XJ88]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGGTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGAAACAAATACTTATATTGCTGACACACTACTTAGTCGTGGTGCAGGGGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAGATGCAGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTCTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGTGACGCTGGTCAAATTGTATTGCCGCGTATTGACCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATGTCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85

Multiple sequence alignment