Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   BVD86_RS14005 Genome accession   NZ_CP018909
Coordinates   2909287..2910420 (+) Length   377 a.a.
NCBI ID   WP_057067887.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2904287..2915420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS13980 (BVD86_14030) - 2904543..2904749 (-) 207 WP_017387367.1 hypothetical protein -
  BVD86_RS13985 (BVD86_14035) oprC 2904803..2906917 (-) 2115 WP_101664229.1 TonB-dependent copper receptor -
  BVD86_RS13990 (BVD86_14040) - 2906990..2907415 (-) 426 WP_017399716.1 DUF2946 family protein -
  BVD86_RS13995 (BVD86_14045) def 2907459..2907989 (-) 531 WP_002114101.1 peptide deformylase -
  BVD86_RS14000 (BVD86_14050) tsaP 2908112..2909266 (+) 1155 WP_101664230.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BVD86_RS14005 (BVD86_14055) dprA 2909287..2910420 (+) 1134 WP_057067887.1 DNA-processing protein DprA Machinery gene
  BVD86_RS14010 (BVD86_14060) yrdC 2910472..2911041 (+) 570 WP_057067740.1 L-threonylcarbamoyladenylate synthase -
  BVD86_RS14015 (BVD86_14065) - 2911435..2912355 (-) 921 WP_081038521.1 DMT family transporter -
  BVD86_RS14020 (BVD86_14070) - 2912459..2913112 (-) 654 WP_078220007.1 TetR/AcrR family transcriptional regulator -
  BVD86_RS14025 (BVD86_14075) nepI 2913248..2914462 (+) 1215 WP_101664231.1 MFS transporter -
  BVD86_RS14030 (BVD86_14080) yeaM 2914484..2915248 (+) 765 WP_101664232.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41848.37 Da        Isoelectric Point: 6.5419

>NTDB_id=211765 BVD86_RS14005 WP_057067887.1 2909287..2910420(+) (dprA) [Acinetobacter pittii strain XJ88]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIVDYFGSCEKAIQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTADDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAVVSSTPEI
PEHLINLYQSLDWVGQNIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=211765 BVD86_RS14005 WP_057067887.1 2909287..2910420(+) (dprA) [Acinetobacter pittii strain XJ88]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGTCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGATCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGCAGATGACTCAGGCTATCCCACTCAATTATTACCTTATACAGATCACCCACC
TATCATTTTTGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTAGGTAGCCGAAAACCAAGCCCAC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTACTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGATTGGCATATGGT
ATTGATGAAGCTGCTCACCAAGGAGCATCAGCACATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCGATTATTACTGAATTTTTGCCTGGAACAC
CCCCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGTGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCCACTCAGTGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTGTAGTTTCTAGTACTCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAAATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

91.247

100

0.912

  dprA Acinetobacter baumannii strain A118

90.716

100

0.907

  dprA Acinetobacter baylyi ADP1

71.391

100

0.721

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387


Multiple sequence alignment