Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   BVD86_RS14000 Genome accession   NZ_CP018909
Coordinates   2908112..2909266 (+) Length   384 a.a.
NCBI ID   WP_101664230.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2903112..2914266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS13975 (BVD86_14025) - 2903261..2904475 (+) 1215 WP_101664228.1 oxygenase MpaB family protein -
  BVD86_RS13980 (BVD86_14030) - 2904543..2904749 (-) 207 WP_017387367.1 hypothetical protein -
  BVD86_RS13985 (BVD86_14035) oprC 2904803..2906917 (-) 2115 WP_101664229.1 TonB-dependent copper receptor -
  BVD86_RS13990 (BVD86_14040) - 2906990..2907415 (-) 426 WP_017399716.1 DUF2946 family protein -
  BVD86_RS13995 (BVD86_14045) def 2907459..2907989 (-) 531 WP_002114101.1 peptide deformylase -
  BVD86_RS14000 (BVD86_14050) tsaP 2908112..2909266 (+) 1155 WP_101664230.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BVD86_RS14005 (BVD86_14055) dprA 2909287..2910420 (+) 1134 WP_057067887.1 DNA-processing protein DprA Machinery gene
  BVD86_RS14010 (BVD86_14060) yrdC 2910472..2911041 (+) 570 WP_057067740.1 L-threonylcarbamoyladenylate synthase -
  BVD86_RS14015 (BVD86_14065) - 2911435..2912355 (-) 921 WP_081038521.1 DMT family transporter -
  BVD86_RS14020 (BVD86_14070) - 2912459..2913112 (-) 654 WP_078220007.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42625.50 Da        Isoelectric Point: 7.2978

>NTDB_id=211764 BVD86_RS14000 WP_101664230.1 2908112..2909266(+) (tsaP) [Acinetobacter pittii strain XJ88]
MKKVFDGMVQFHALGIKKHLLALALFTGVAFGTVAETYAASPNHNPPSLRSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESLNNNVPVIPLEHIKQWLE
HSTILPIDAIQHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAVYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYNSEVRRGDRVMPEEEATLPTLFYPVDATQVTDGGKIIRVMGSIGTAAKNSVVTLDRGTAQGIQVGQ
VFDITQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPVKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=211764 BVD86_RS14000 WP_101664230.1 2908112..2909266(+) (tsaP) [Acinetobacter pittii strain XJ88]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTAGCACTTTTTAC
AGGGGTTGCATTCGGTACAGTAGCAGAGACTTATGCTGCTAGTCCGAACCATAATCCACCCTCTCTTAGAAGTAATGCAC
CACATGTCTACGTTGTAAAACGAGGAGATACGCTATGGGATATTTCCGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCACACTGGATTTATCCAGGTGATCGATTACTGTTATGTAGTTTAGA
TGGCCGTCCATTGGTTGGAAAAGATGAGGGAGATGGCTGTGTCGGCATTATTCGCCGTTACACAGGTCAAATGACAAATT
TACAACCTCAAGTTCGTGTGGAGTCACTTAACAATAACGTACCTGTTATTCCTCTTGAGCATATCAAACAGTGGTTAGAA
CACAGCACTATTCTACCTATCGATGCAATTCAACATACTCCTTATGTAGTCGGTACTGCCGATCAACGTGTACTGGCGGC
AAAAGGACAGACTATTTATGCGCGCGGACAAGGTTTAATTGATGGTCAACGTTATGCAGTTTATCGTGAAGGTGAACCTT
ATTATTTCACCGATAATAAAGGCAAAAAGCACAGTCTAGGTATTGAGCTACAACAAGTTGCCTCAGGGATTGCGATCTCT
TCTGAAAAAGACATTACCACGCTTGAGTTAACTGATAGCTACAATTCTGAAGTACGTCGTGGTGATCGGGTAATGCCAGA
AGAAGAAGCAACATTGCCTACTTTGTTTTATCCGGTAGATGCCACTCAGGTGACGGACGGCGGCAAAATTATTCGTGTAA
TGGGCTCAATTGGTACTGCTGCCAAAAATAGTGTGGTGACTTTAGATCGCGGTACGGCACAAGGTATTCAAGTAGGACAA
GTTTTTGATATTACACAACAAGGTGAAACCATTCGAGATCCTAAAACCAAAGAACCAATACAGTTACCAGGACAACAAAT
TGGTAGTCTGATGGTCTTTAGAACTTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGCGATTTACCAGTTAAAGTTG
GTTCAAGCATTCAGCCACCCCGCTTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

90.365

100

0.904


Multiple sequence alignment