Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVD86_RS13790 Genome accession   NZ_CP018909
Coordinates   2864744..2866231 (+) Length   495 a.a.
NCBI ID   WP_032063100.1    Uniprot ID   A0A009QQA1
Organism   Acinetobacter pittii strain XJ88     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2859744..2871231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS13765 (BVD86_13815) ribD 2860695..2861780 (-) 1086 WP_101664219.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  BVD86_RS13770 (BVD86_13820) nrdR 2861796..2862254 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  BVD86_RS13775 (BVD86_13825) amtB 2862379..2863776 (-) 1398 WP_101664220.1 ammonium transporter -
  BVD86_RS13780 (BVD86_13830) glnK 2863834..2864172 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  BVD86_RS13785 (BVD86_13835) - 2864451..2864678 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  BVD86_RS13790 (BVD86_13840) comM 2864744..2866231 (+) 1488 WP_032063100.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVD86_RS13795 (BVD86_13845) - 2866246..2867679 (-) 1434 WP_101664221.1 PLP-dependent aminotransferase family protein -
  BVD86_RS13800 (BVD86_13850) - 2867790..2868566 (+) 777 WP_101664222.1 aldolase -
  BVD86_RS13805 (BVD86_13855) - 2868582..2869460 (+) 879 WP_101664223.1 dihydrodipicolinate synthase family protein -
  BVD86_RS13810 (BVD86_13860) - 2869502..2870314 (-) 813 WP_017385855.1 TorF family putative porin -
  BVD86_RS13815 (BVD86_13865) - 2870353..2870541 (-) 189 WP_017385854.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54465.58 Da        Isoelectric Point: 7.7209

>NTDB_id=211763 BVD86_RS13790 WP_032063100.1 2864744..2866231(+) (comM) [Acinetobacter pittii strain XJ88]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=211763 BVD86_RS13790 WP_032063100.1 2864744..2866231(+) (comM) [Acinetobacter pittii strain XJ88]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAGGTCGAGGTACATGTGAGTCA
AGGTTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCTTCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTATCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGCCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCACATACCTTTGGACAGCGTCCATTTCGGGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGTCAGCCACTTGAATCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGTCAATGTTCACCTGAGAGTATTAAGCGCTATCAAAACCGTATATCAGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QQA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.605

100

0.507
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467

Multiple sequence alignment