Detailed information NTG0211572

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: BUN12_RS21725
• Genome accession: NZ_CP018902
• Coordinates: 2566224..2566913 (-)
• Length: 229 a.a.
• NCBI ID: WP_198315882.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain HK1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2561224..2571913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUN12_RS13375 (BUN12_2624)	fliW	2561314..2561745 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
BUN12_RS13380 (BUN12_2625)	-	2561775..2562344 (-)	570	WP_014471091.1	DUF6470 family protein	-
BUN12_RS13385 (BUN12_2626)	flgL	2562436..2563353 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
BUN12_RS13390 (BUN12_2627)	flgK	2563365..2564882 (-)	1518	WP_013353779.1	flagellar hook-associated protein FlgK	-
BUN12_RS13395 (BUN12_2628)	-	2564898..2565380 (-)	483	WP_013353780.1	flagellar protein FlgN	-
BUN12_RS13400 (BUN12_2629)	flgM	2565395..2565661 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
BUN12_RS13405 (BUN12_2630)	-	2565731..2566150 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
BUN12_RS21725	comFC	2566224..2566913 (-)	690	WP_198315882.1	ComF family protein	Machinery gene
BUN12_RS13415 (BUN12_2632)	-	2566919..2567203 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
BUN12_RS13420 (BUN12_2633)	comFA	2567262..2568647 (-)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
BUN12_RS13425 (BUN12_2634)	-	2568754..2569602 (-)	849	WP_013353786.1	DegV family protein	-
BUN12_RS13430 (BUN12_2635)	degU	2569699..2570388 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
BUN12_RS13435 (BUN12_2636)	degS	2570465..2571628 (-)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25295.06 Da
• Isoelectric Point: 8.6865

>NTDB_id=211572 BUN12_RS21725 WP_198315882.1 2566224..2566913(-) (comFC) [Bacillus amyloliquefaciens strain HK1]
MNCLLCDSPISRSLTWSSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNKKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=211572 BUN12_RS21725 WP_198315882.1 2566224..2566913(-) (comFC) [Bacillus amyloliquefaciens strain HK1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGATCACTGACTTGGAGTTCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATCGAAGGCCCCGTGTGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACAAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGAGCGCGGATTTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (171-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.471	99.127	0.59
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae D39	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae R6	35.931	100	0.362