Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KSH_RS07520 Genome accession   NZ_CP024180
Coordinates   1697043..1697459 (-) Length   138 a.a.
NCBI ID   WP_099808339.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692043..1702459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS07505 (KSH_07505) - 1692967..1694232 (-) 1266 WP_099808336.1 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase -
  KSH_RS07510 (KSH_07510) - 1694232..1696031 (-) 1800 WP_099808337.1 PglL family O-oligosaccharyltransferase -
  KSH_RS07515 (KSH_07515) pilA 1696191..1696682 (-) 492 WP_099808338.1 pilin Machinery gene
  KSH_RS07520 (KSH_07520) pilE 1697043..1697459 (-) 417 WP_099808339.1 type IV pilin protein Machinery gene
  KSH_RS07525 (KSH_07525) - 1697459..1698028 (-) 570 WP_310585986.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15051.31 Da        Isoelectric Point: 9.7091

>NTDB_id=211441 KSH_RS07520 WP_099808339.1 1697043..1697459(-) (pilE) [Moraxella osloensis strain KSH]
MKNRYSQQGFTLVELMIVVAIIGILAAIAYPSYQRYVIKTKRTDMMTEMQNIASQIESRKLAQGSYTNAGMGLDGSFPRS
GTALYTIALAPTPLTDRWTITATPVSSSQMATDGRLTLNAQGVKCRGTSCGMGQEWNN

Nucleotide


Download         Length: 417 bp        

>NTDB_id=211441 KSH_RS07520 WP_099808339.1 1697043..1697459(-) (pilE) [Moraxella osloensis strain KSH]
ATGAAAAATCGATATAGTCAACAAGGTTTTACCCTAGTCGAACTCATGATAGTGGTCGCTATCATCGGTATATTGGCGGC
GATTGCGTATCCAAGCTATCAGCGCTACGTCATCAAAACCAAACGCACCGATATGATGACAGAGATGCAAAACATTGCCT
CGCAAATTGAATCGCGTAAACTGGCACAAGGCAGTTACACTAACGCAGGCATGGGATTAGATGGGAGTTTCCCTAGAAGT
GGTACAGCCTTGTATACCATTGCCCTAGCACCCACACCCCTCACTGACCGTTGGACAATTACAGCGACACCTGTTAGTTC
ATCGCAGATGGCAACCGACGGTAGACTTACGCTAAACGCTCAAGGAGTCAAATGCCGAGGTACTTCATGTGGTATGGGAC
AAGAGTGGAATAACTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-109)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

49.593

89.13

0.442
  comF Acinetobacter baylyi ADP1

48.76

87.681

0.428
  comE Acinetobacter baylyi ADP1

30

100

0.37
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.65

89.13

0.362
  pilA Vibrio cholerae strain A1552

40.65

89.13

0.362
  pilA Vibrio cholerae C6706

40.65

89.13

0.362

Multiple sequence alignment