Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KSH_RS07515 Genome accession   NZ_CP024180
Coordinates   1696191..1696682 (-) Length   163 a.a.
NCBI ID   WP_099808338.1    Uniprot ID   -
Organism   Moraxella osloensis strain KSH     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1691191..1701682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSH_RS07500 (KSH_07500) pseB 1691929..1692927 (-) 999 WP_099808335.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  KSH_RS07505 (KSH_07505) - 1692967..1694232 (-) 1266 WP_099808336.1 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase -
  KSH_RS07510 (KSH_07510) - 1694232..1696031 (-) 1800 WP_099808337.1 PglL family O-oligosaccharyltransferase -
  KSH_RS07515 (KSH_07515) pilA 1696191..1696682 (-) 492 WP_099808338.1 pilin Machinery gene
  KSH_RS07520 (KSH_07520) pilE 1697043..1697459 (-) 417 WP_099808339.1 type IV pilin protein Machinery gene
  KSH_RS07525 (KSH_07525) - 1697459..1698028 (-) 570 WP_310585986.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17539.82 Da        Isoelectric Point: 7.7619

>NTDB_id=211440 KSH_RS07515 WP_099808338.1 1696191..1696682(-) (pilA) [Moraxella osloensis strain KSH]
MNAQKGFTLIELMIVIAIIGILAAIAIPQYQNYIARSQFSESQVLLSGVKTAAQEKIDQGKTFDASTGASTASTNALGVQ
LEGKYGLIGSNKTTATAPAWNGTNDTYPVSYYFNDTVNKNLRDKKVIMTYTQASGKWECTTDVPQQYANNCAAIATTPTP
PKE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=211440 KSH_RS07515 WP_099808338.1 1696191..1696682(-) (pilA) [Moraxella osloensis strain KSH]
ATGAACGCTCAAAAAGGTTTTACCCTTATCGAATTAATGATTGTTATCGCGATTATCGGTATTTTAGCTGCGATTGCGAT
TCCACAGTATCAAAACTATATCGCTCGCTCTCAGTTTTCTGAATCTCAAGTTTTATTAAGTGGTGTGAAAACAGCAGCTC
AAGAGAAAATTGACCAAGGTAAAACATTTGACGCTTCAACAGGTGCTTCAACAGCTAGTACTAATGCGTTAGGTGTGCAG
TTGGAAGGAAAATATGGTCTAATTGGAAGTAATAAAACCACCGCAACTGCTCCAGCTTGGAATGGTACAAATGATACATA
TCCTGTTAGTTACTACTTCAATGATACAGTTAATAAAAATTTACGTGATAAGAAAGTTATAATGACTTATACACAAGCTT
CAGGAAAGTGGGAATGTACTACAGATGTGCCTCAACAATATGCTAATAACTGCGCTGCTATTGCTACTACTCCTACTCCT
CCTAAAGAGTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-148)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

42.953

91.411

0.393
  pilA Pseudomonas aeruginosa PAK

42

92.025

0.387
  pilA Acinetobacter baumannii strain A118

39.735

92.638

0.368
  pilA Acinetobacter nosocomialis M2

44.361

81.595

0.362

Multiple sequence alignment