Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BLE401_RS12505 Genome accession   NZ_CP018889
Coordinates   2961765..2963270 (-) Length   501 a.a.
NCBI ID   WP_062153294.1    Uniprot ID   A0A2N9YFN4
Organism   Beggiatoa leptomitoformis strain D-401     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2956765..2968270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLE401_RS12480 (BLE401_11865) - 2957640..2958809 (-) 1170 WP_062153284.1 GTPase family protein -
  BLE401_RS12485 (BLE401_11860) - 2958994..2959326 (-) 333 WP_062153286.1 hypothetical protein -
  BLE401_RS12490 (BLE401_11855) - 2959462..2960226 (-) 765 WP_062153288.1 PspA/IM30 family protein -
  BLE401_RS12495 (BLE401_11850) - 2960238..2960663 (-) 426 WP_062153290.1 YjfI family protein -
  BLE401_RS12500 (BLE401_11845) - 2960956..2961738 (-) 783 WP_062153292.1 ADP-ribosylglycohydrolase family protein -
  BLE401_RS12505 (BLE401_11840) comM 2961765..2963270 (-) 1506 WP_062153294.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BLE401_RS12510 (BLE401_11835) - 2963277..2963561 (-) 285 WP_062153296.1 accessory factor UbiK family protein -
  BLE401_RS12515 (BLE401_11830) - 2963736..2964746 (+) 1011 WP_062153298.1 DUF6352 family protein -
  BLE401_RS12520 (BLE401_11820) - 2964939..2965961 (-) 1023 WP_062153301.1 amino acid ABC transporter substrate-binding protein -
  BLE401_RS12525 (BLE401_11815) - 2966307..2967659 (+) 1353 WP_062153303.1 response regulator -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55409.76 Da        Isoelectric Point: 8.1680

>NTDB_id=211336 BLE401_RS12505 WP_062153294.1 2961765..2963270(-) (comM) [Beggiatoa leptomitoformis strain D-401]
MYALSVVHSRAQVGIQAIPVTIEVHLTGGLPSLSIVGLPEAAVKESKDRVRSALLNTQFDFPLQRVTINLAPADLPKEGG
RFDLAIAIGILAASGQIPSQQLSEYEFIGELALSGELRPIRGVLPVAMAVRDKQRKLVVPADNAHEASMVRNTPILPIKH
LLDICAHLHGTTPITPHCMDNVPHPTYTHHPIDLNEVRGQHHAKRALEVAAAGGHNLLMLGPPGTGKTMLASRMATILPP
MTEEEALETAAIASIANQGFNPQTWGHRPFRAPHHTASAIALVGGGSQPRPGEISLAHHGILFLDELPEFDKKVLEVLRE
PLESGRIVISRAARQAEFPAHFQLIAAMNPCPCGYLGDPRCHCSVEQIRRYRGRLSGPLLDRIDLHIEVPNLPRTELRTE
TIRESSTEVQQRVVTARQRQLQRCSRPNSYMNNREIEQYCRLTENDERLLDAAIAQLGLSARAWHRILKVARTIADLGDS
EQIRTQHLTEAITYRRMERMK

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=211336 BLE401_RS12505 WP_062153294.1 2961765..2963270(-) (comM) [Beggiatoa leptomitoformis strain D-401]
CTGTACGCTCTATCCGTTGTTCATAGTCGCGCACAAGTCGGCATACAAGCAATTCCTGTGACGATTGAAGTCCATTTAAC
AGGTGGTTTACCCAGTTTATCGATTGTGGGCTTGCCCGAAGCCGCCGTAAAGGAAAGCAAAGACAGAGTCAGGAGCGCGT
TGTTAAATACCCAGTTTGATTTTCCATTACAGCGCGTTACCATCAATCTTGCCCCTGCCGATTTACCCAAAGAAGGCGGG
CGTTTTGATTTAGCAATTGCTATCGGTATTCTTGCTGCTTCGGGACAAATTCCCAGCCAACAACTGAGTGAATATGAATT
TATTGGTGAACTTGCCCTCAGTGGTGAATTACGTCCTATACGTGGAGTGCTTCCTGTCGCAATGGCTGTGCGTGATAAAC
AACGCAAATTAGTTGTCCCCGCAGACAACGCACATGAAGCTTCAATGGTTAGAAATACGCCCATTCTCCCTATCAAACAT
TTGTTGGATATCTGCGCCCATTTACACGGTACAACCCCCATTACACCCCACTGTATGGATAACGTTCCACACCCCACTTA
TACCCATCATCCAATTGATTTAAATGAAGTCCGTGGACAACATCACGCAAAGCGGGCGTTAGAAGTTGCCGCTGCTGGGG
GACATAATCTTTTAATGCTCGGTCCACCCGGAACAGGTAAAACCATGTTAGCCAGCCGTATGGCAACCATTTTACCGCCA
ATGACCGAAGAAGAAGCCTTAGAAACCGCTGCAATTGCCTCCATTGCCAATCAAGGATTTAATCCGCAAACATGGGGACA
TAGACCGTTTCGCGCGCCACACCATACCGCCTCTGCTATTGCGCTCGTCGGTGGCGGCAGTCAACCACGACCCGGTGAAA
TTTCTCTAGCACATCATGGCATTTTATTTCTGGATGAATTACCCGAGTTTGATAAAAAAGTCTTAGAAGTGCTACGTGAA
CCGCTAGAATCTGGGCGTATTGTCATTTCACGCGCTGCCAGACAAGCAGAATTTCCTGCCCATTTTCAACTAATTGCTGC
CATGAATCCCTGTCCTTGCGGTTATTTAGGCGACCCCCGCTGTCATTGCTCAGTAGAACAAATTCGTCGTTATCGCGGTC
GCTTGTCAGGCCCTTTACTAGACCGTATAGACCTACATATTGAAGTGCCAAATTTACCCCGCACCGAATTACGCACCGAA
ACCATACGCGAAAGCAGTACAGAGGTTCAACAACGAGTGGTTACTGCACGTCAACGTCAACTACAACGCTGTAGCAGACC
CAATAGCTATATGAATAATCGTGAGATTGAACAATATTGTCGTCTTACTGAAAACGATGAACGACTGCTTGATGCGGCCA
TTGCACAATTAGGCTTATCCGCGCGAGCATGGCATCGGATTTTAAAAGTTGCGCGCACCATTGCAGATTTAGGCGATAGT
GAACAGATTCGTACACAACATTTAACCGAAGCGATTACGTATCGACGTATGGAACGGATGAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(22-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N9YFN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.711

99.601

0.555
  comM Vibrio campbellii strain DS40M4

54.781

100

0.549
  comM Glaesserella parasuis strain SC1401

53.861

100

0.543
  comM Haemophilus influenzae Rd KW20

53.293

100

0.533
  comM Legionella pneumophila str. Paris

48.193

99.401

0.479
  comM Legionella pneumophila strain ERS1305867

48.193

99.401

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.733

100

0.471

Multiple sequence alignment