Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BUQ73_RS26980 Genome accession   NZ_CP018846
Coordinates   5981880..5983370 (-) Length   496 a.a.
NCBI ID   WP_079230367.1    Uniprot ID   -
Organism   Pseudomonas putida strain AA7     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5976880..5988370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ73_RS26965 - 5979917..5980897 (+) 981 WP_079230365.1 response regulator -
  BUQ73_RS26970 - 5980894..5981259 (+) 366 WP_177326665.1 response regulator transcription factor -
  BUQ73_RS26975 - 5981333..5981761 (+) 429 WP_079230366.1 DoxX family protein -
  BUQ73_RS26980 comM 5981880..5983370 (-) 1491 WP_079230367.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BUQ73_RS26985 - 5983627..5985639 (+) 2013 WP_079230368.1 DUF4034 domain-containing protein -
  BUQ73_RS26990 - 5985673..5986101 (-) 429 WP_079230369.1 TOBE domain-containing protein -
  BUQ73_RS26995 - 5986125..5986388 (-) 264 WP_008091866.1 accessory factor UbiK family protein -
  BUQ73_RS27000 glnK 5986765..5987103 (+) 339 WP_002555808.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52802.51 Da        Isoelectric Point: 7.9621

>NTDB_id=210989 BUQ73_RS26980 WP_079230367.1 5981880..5983370(-) (comM) [Pseudomonas putida strain AA7]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPIAALSDMECLGELALSGSLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPFAANGLVLQQHPYPDLSEVQGQVAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHAPLSSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARETTTLNSQPSG
ETSTGVAARVAEAREVQQRRQGCANAFLNLEGLRRHCQLAAADQAWLETACERLSLSLRAAHRLLKVARTLADLEGSQVI
GKSHLAEALQYRPGSR

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=210989 BUQ73_RS26980 WP_079230367.1 5981880..5983370(-) (comM) [Pseudomonas putida strain AA7]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAAGTCGGCGTGCAGGCCCCGGCAGTCAGCGTCGAAACGCACCTGGCCAA
CGGCCTGCCCCATCTCACCCTGGTCGGCTTGCCGGAAACCACGGTCAAGGAGAGCAAGGACCGTGTGCGCAGCGCCATCG
TCAATTCCGGGCTGAATTACCCCCAACGGCGCATTACCCAGAACCTCGCACCGGCCGACCTGCCCAAGGACGGCGGGCGT
TATGACCTGGCCATCGCATTGGGCATCCTGGCCGCCGACGGCCAAGTGCCGATAGCGGCGTTGAGCGACATGGAGTGCCT
GGGTGAACTGGCACTGTCGGGCAGCCTGCGCCCAGTGCAGGGTGTATTGCCGGCAGCGCTGGCGGCACGCGAGGCGGGCC
GGGCGCTGGTGGTGCCGCGGGAGAATGCCGAAGAAGCCAGCCTGGCCGGCGGACTGGTGGTGTATGCAGTGGGGCATCTG
CTGGAGCTGGTAGCGCACCTCAACGGGCAAGTGCCGTTGCCGCCGTTCGCCGCCAATGGCCTGGTCCTGCAGCAGCATCC
TTACCCGGACCTCAGCGAGGTCCAGGGCCAGGTCGCGGCCAAGCGGGCATTGCTGCTGGCCGCAGCCGGGGCGCATAACT
TGTTGTTCACCGGCCCGCCCGGCACGGGCAAGACCTTGCTCGCCAGCCGTCTTCCCGGCCTGCTGCCGCCGCTGGATGAA
CACGAGGCGCTGGAGGTAGCGGCGATCCAGTCGGTCAGTGGTCACGCGCCGCTTAGCAGCTGGCCGCAGCGGCCATTTCG
CCATCCGCACCATTCGGCCTCAGGGCCCGCGCTGGTTGGCGGCGGCAGCCGGCCGCAACCTGGCGAGATCACTCTGGCGC
ACCATGGCGTGCTGTTTCTCGACGAGCTCCCAGAGTTTGAAAGGCGCGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGATTGCACGGGCGCGCGACAAGGTGCGTTTCCCGGCACGCTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGGTATCTGGGCGACCCGACTGGACGCTGCCGCTGCAGTACCGAACAGATCGCACGGTATCGCAACAAGCTGT
CAGGCCCGTTGCTGGACCGCATCGACTTGCACCTGACCGTGGCCCGCGAGACCACCACGCTCAACAGCCAGCCGAGCGGC
GAAACCAGCACCGGTGTGGCAGCCAGGGTGGCCGAGGCCCGTGAAGTGCAGCAGCGACGGCAAGGCTGTGCCAATGCGTT
TCTAAACCTGGAGGGGTTGCGTCGTCATTGTCAGCTGGCAGCGGCGGACCAGGCTTGGCTGGAGACTGCCTGCGAGCGGC
TGAGTCTTTCTTTGCGGGCAGCGCATCGGCTGCTGAAAGTTGCACGCACATTGGCCGATCTGGAAGGCAGTCAGGTGATC
GGCAAAAGCCATCTGGCCGAGGCCTTGCAGTACCGACCAGGGAGCCGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.357

100

0.562
  comM Vibrio campbellii strain DS40M4

55.4

100

0.558
  comM Vibrio cholerae strain A1552

55.311

100

0.556
  comM Glaesserella parasuis strain SC1401

53.557

100

0.546
  comM Legionella pneumophila str. Paris

49.194

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.233

100

0.482

Multiple sequence alignment