Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BSQ33_RS09025 Genome accession   NZ_CP018835
Coordinates   2000363..2001886 (+) Length   507 a.a.
NCBI ID   WP_088133889.1    Uniprot ID   A0A1Z2SF68
Organism   Vibrio gazogenes strain ATCC 43942     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1995363..2006886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS09010 (BSQ33_09065) - 1996983..1997924 (-) 942 WP_088133888.1 branched-chain amino acid transaminase -
  BSQ33_RS09015 (BSQ33_09070) ilvM 1997938..1998222 (-) 285 WP_021021460.1 acetolactate synthase 2 small subunit -
  BSQ33_RS09020 (BSQ33_09075) ilvG 1998235..1999881 (-) 1647 WP_021021461.1 acetolactate synthase 2 catalytic subunit -
  BSQ33_RS09025 (BSQ33_09080) comM 2000363..2001886 (+) 1524 WP_088133889.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BSQ33_RS09030 (BSQ33_09085) - 2001984..2002862 (+) 879 WP_021021463.1 acyltransferase -
  BSQ33_RS09035 (BSQ33_09090) - 2002971..2003570 (-) 600 WP_088133890.1 thiol:disulfide interchange protein DsbA/DsbL -
  BSQ33_RS09040 (BSQ33_09095) - 2003720..2004706 (-) 987 WP_088133891.1 serine/threonine protein kinase -
  BSQ33_RS09045 (BSQ33_09100) - 2004833..2006722 (-) 1890 WP_021021466.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55059.16 Da        Isoelectric Point: 7.0017

>NTDB_id=210779 BSQ33_RS09025 WP_088133889.1 2000363..2001886(+) (comM) [Vibrio gazogenes strain ATCC 43942]
MGLAIIHSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIIHSRFEFPPKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIMADHLANYEFLGELALSGQLRTVKGVLPAALAAGLAGRALVVPHENGDQAALVGQEQHYSAGSL
QEVCQALCGDLSLGLHQSPPQIEQPASGRDLQDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLCDLLPEMSN
EEAMETAAVASLTQQDIHQYNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERRVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYDGQESRINPQHILRYLSRLSGPLLDRFDLSIEIPALPKGMLAEGGGR
GETTQVVRERVLRARELMLRLRGKANSLLTSREIETFCPLAKSDADFLENALHSLGLSIRAYHRIIKVARTIADLAGEEH
IQRAHLAEALGYRAMDRLLKQLTMQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=210779 BSQ33_RS09025 WP_088133889.1 2000363..2001886(+) (comM) [Vibrio gazogenes strain ATCC 43942]
ATGGGGTTAGCAATCATTCATAGTCGGGCGAGTGTTGGTGTAGAAGCACCGTTGGTGACAGTTGAAGTGCATATTAGTAA
TGGGATGCCCGGATTTACTCTGGTGGGCTTGCCGGAAACCACGGTCAAAGAATCACGGGATCGGGTCCGTAGTGCGATTA
TTCATTCTCGGTTTGAATTTCCACCCAAACGCATCACTGTCAATCTGGCACCGGCCGATTTACCGAAAGAGGGTGGCCGA
TTCGATCTGCCTATTGCTTTGGGGATTCTGGCAGCGTCGGATCAAATTATGGCGGATCATCTGGCAAACTATGAGTTTTT
AGGGGAGTTAGCGTTATCCGGCCAGTTACGAACCGTGAAAGGCGTTTTACCCGCAGCTCTGGCTGCCGGGTTGGCTGGCC
GTGCTTTGGTGGTACCGCATGAAAATGGTGATCAGGCGGCTTTAGTCGGGCAAGAACAACATTATTCTGCCGGGAGTTTG
CAAGAAGTCTGTCAGGCTTTATGCGGCGATTTATCGCTGGGATTACATCAGTCTCCGCCACAGATTGAACAACCAGCTTC
TGGGCGGGATTTGCAGGATATCATCGGCCAGCAACAGGGGAAGCGTGCTTTAGAAATTGCCGCTGCCGGGCATCATAACT
TGCTGTTTCTCGGGCCTCCGGGAACAGGTAAAACGATGCTGGCCTCGCGGTTATGTGACTTACTGCCTGAGATGAGTAAT
GAAGAAGCGATGGAAACCGCAGCGGTTGCTTCACTGACGCAGCAGGATATTCATCAGTACAACTGGAAACAGCGGCCATT
TCGAGCACCGCATCATTCCAGTTCTATGGCTGCTTTGGTCGGTGGCGGTTCGATTCCGCGTCCCGGTGAAATTTCACTGG
CTCATAATGGATTACTCTTTCTCGATGAGATGCCGGAGTTCGAACGTCGAGTGCTCGACTCATTACGTGAACCCTTGGAG
TCGGGGGAGATTGTCATTTCCCGGGCGCAAGGGAAGACGCGCTTCCCGGCGCGATTTCAGTTAGTCGGGGCGTTAAATCC
AAGCCCGACAGGGTATTATGATGGTCAGGAAAGCCGGATCAATCCGCAACATATTCTTCGTTATCTGAGCCGATTATCAG
GGCCGTTATTGGATCGCTTTGACTTGTCGATCGAGATCCCTGCTTTACCGAAAGGCATGCTTGCCGAAGGCGGGGGGCGG
GGAGAAACAACGCAGGTGGTGCGTGAGCGAGTGCTGCGGGCGCGTGAATTAATGCTCCGTTTACGGGGAAAAGCGAATTC
TCTTCTGACCAGCCGGGAAATTGAGACGTTCTGCCCATTGGCTAAATCTGATGCCGATTTTCTGGAAAATGCATTGCACA
GTCTCGGGCTGTCGATTCGTGCTTATCATCGCATTATTAAAGTTGCCCGGACTATTGCTGATTTAGCGGGAGAGGAACAT
ATCCAGCGGGCACATCTGGCAGAAGCGCTGGGATACAGGGCCATGGATCGATTATTGAAGCAGTTGACGATGCAAGCTGT
GTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z2SF68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

82.446

100

0.824
  comM Vibrio campbellii strain DS40M4

82.051

100

0.821
  comM Haemophilus influenzae Rd KW20

65.226

100

0.655
  comM Glaesserella parasuis strain SC1401

65.02

99.803

0.649
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

100

0.438

Multiple sequence alignment