Detailed information NTG0210607

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: BTR42_RS00660
• Genome accession: NZ_CP018822
• Coordinates: 98093..98560 (+)
• Length: 155 a.a.
• NCBI ID: WP_012961330.1
• Uniprot ID: A0AA94M0F9
• Organism: Streptococcus gallolyticus subsp. gallolyticus DSM 16831
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 93093..103560

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTR42_RS00630 (BTR42_00395)	-	94837..95205 (+)	369	WP_074658936.1	DUF1033 family protein	-
BTR42_RS00635 (BTR42_00400)	comYA	95276..96217 (+)	942	WP_077495921.1	competence type IV pilus ATPase ComGA	Machinery gene
BTR42_RS00640 (BTR42_00405)	comYB	96099..97184 (+)	1086	WP_231873059.1	competence type IV pilus assembly protein ComGB	Machinery gene
BTR42_RS00645 (BTR42_00410)	comYC	97184..97477 (+)	294	WP_039695588.1	competence type IV pilus major pilin ComGC	Machinery gene
BTR42_RS00650 (BTR42_00415)	comYD	97461..97892 (+)	432	WP_009853232.1	competence type IV pilus minor pilin ComGD	Machinery gene
BTR42_RS00655 (BTR42_00420)	comGE	97846..98139 (+)	294	WP_012961329.1	competence type IV pilus minor pilin ComGE	-
BTR42_RS00660 (BTR42_00425)	comYF	98093..98560 (+)	468	WP_012961330.1	competence type IV pilus minor pilin ComGF	Machinery gene
BTR42_RS00665 (BTR42_00430)	comGG	98514..98864 (+)	351	WP_420031090.1	competence type IV pilus minor pilin ComGG	-
BTR42_RS00670 (BTR42_00435)	comYH	98919..99875 (+)	957	WP_009853236.1	class I SAM-dependent methyltransferase	Machinery gene
BTR42_RS00675 (BTR42_00440)	-	99928..101127 (+)	1200	WP_061458770.1	acetate kinase	-
BTR42_RS00680 (BTR42_00445)	-	101289..101489 (+)	201	WP_012961332.1	helix-turn-helix transcriptional regulator	-
BTR42_RS00690 (BTR42_00455)	-	101721..102173 (+)	453	WP_061458772.1	hypothetical protein	-
BTR42_RS00695 (BTR42_00460)	-	102185..102820 (+)	636	WP_077495927.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 155 a.a.
• Molecular weight: 17515.10 Da
• Isoelectric Point: 9.7290

>NTDB_id=210607 BTR42_RS00660 WP_012961330.1 98093..98560(+) (comYF) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MFMRGKRKYYTLKKTSLKAFTLIECLVSLLVISGAILVYNALTQSISANVHYLSENQEENWLLFSQQLRAELANCQLDKV
ENNKLYVTKSSQKLAFGQSKADDFRKTNASGQGYQPMIFGVKSSAISRDGQKVTMTLNLENGLERTFVYTFETAS

Nucleotide

• Length: 468 bp

>NTDB_id=210607 BTR42_RS00660 WP_012961330.1 98093..98560(+) (comYF) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGTTTATGAGGGGAAAACGGAAATATTACACGTTAAAAAAGACTAGTTTAAAGGCATTCACCCTCATAGAATGTTTGGT
TTCTTTATTGGTAATTTCGGGTGCTATTCTTGTTTACAATGCCTTAACGCAATCTATTTCTGCAAATGTGCATTATTTGT
CGGAAAATCAAGAGGAAAACTGGCTTTTGTTTTCACAACAGCTGCGTGCGGAGCTTGCCAATTGTCAATTAGATAAGGTT
GAAAATAACAAGCTATATGTGACGAAGTCCAGTCAAAAGTTGGCATTTGGACAGTCAAAGGCTGATGATTTTCGTAAAAC
AAACGCATCTGGTCAAGGTTATCAGCCAATGATATTTGGAGTAAAATCTTCTGCTATTTCTAGAGATGGTCAGAAGGTGA
CAATGACATTGAATTTAGAGAATGGTTTGGAGAGGACATTTGTTTACACTTTTGAAACGGCAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (51-144)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.554	89.677	0.516
comYF	Streptococcus mutans UA159	56.835	89.677	0.51
comGF/cglF	Streptococcus pneumoniae Rx1	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae D39	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae R6	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae TIGR4	46.429	90.323	0.419
comGF/cglF	Streptococcus mitis NCTC 12261	45.07	91.613	0.413
comGF/cglF	Streptococcus mitis SK321	44.366	91.613	0.406
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	89.032	0.387