Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GS_RS15660 Genome accession   NC_002939
Coordinates   3419681..3420121 (+) Length   146 a.a.
NCBI ID   WP_010943738.1    Uniprot ID   Q747Z8
Organism   Geobacter sulfurreducens PCA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3414681..3425121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS_RS15640 (GSU3113) - 3416415..3418100 (-) 1686 WP_010943734.1 ribonuclease J -
  GS_RS15645 (GSU3114) - 3418107..3418508 (-) 402 WP_010943735.1 tetratricopeptide repeat protein -
  GS_RS15650 (GSU3115) - 3418515..3418694 (-) 180 WP_010943736.1 hypothetical protein -
  GS_RS15655 (GSU3116) - 3418696..3419400 (-) 705 WP_010943737.1 lysophospholipid acyltransferase family protein -
  GS_RS15660 (GSU3117) ssb 3419681..3420121 (+) 441 WP_010943738.1 single-stranded DNA-binding protein Machinery gene
  GS_RS15665 (GSU3118) - 3420184..3420867 (-) 684 WP_010943739.1 response regulator -
  GS_RS15670 (GSU3119) - 3420864..3422303 (-) 1440 WP_010943740.1 ATP-binding protein -
  GS_RS15675 (GSU3120) - 3422483..3422959 (+) 477 WP_010943741.1 Spy/CpxP family protein refolding chaperone -
  GS_RS15680 (GSU3121) - 3423028..3423492 (+) 465 WP_010943742.1 EF-hand domain-containing protein -
  GS_RS15685 (GSU3122) - 3423522..3424637 (-) 1116 WP_010943743.1 MBL fold metallo-hydrolase -
  GS_RS15690 (GSU3123) - 3424661..3425032 (-) 372 WP_010943744.1 aldehyde ferredoxin oxidoreductase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16028.82 Da        Isoelectric Point: 5.3353

>NTDB_id=21059 GS_RS15660 WP_010943738.1 3419681..3420121(+) (ssb) [Geobacter sulfurreducens PCA]
MASLNKVMLIGNLGKDPEVRYTPAGTAVASFSLATTEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGR
LQTRKWQDKDGRDRWTTEVVGERMQMLGGKGEGGGGRAGGRGGQESGFGGPSYDEPAFNPDDDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=21059 GS_RS15660 WP_010943738.1 3419681..3420121(+) (ssb) [Geobacter sulfurreducens PCA]
ATGGCAAGTCTCAACAAAGTGATGCTCATCGGCAATCTCGGGAAGGATCCCGAGGTTCGCTACACGCCTGCCGGCACGGC
AGTTGCCAGCTTCTCCCTTGCCACCACCGAAAAATTCAAGAACAGGAACGGCGAATTCGAGGAAAAGACCGAATGGCACA
ACGTGGTCCTCTGGGGCCGCCAGGCCGAAATCGCCGGTGAATACCTGGCCAAGGGGCGGACCGTTTTCATCGAGGGGCGG
CTCCAGACCCGCAAGTGGCAGGACAAGGACGGCCGCGACCGCTGGACCACCGAGGTGGTGGGCGAGCGGATGCAGATGCT
CGGCGGCAAGGGCGAGGGGGGCGGCGGACGCGCAGGCGGACGCGGCGGCCAGGAGAGCGGCTTCGGCGGCCCCTCCTATG
ACGAGCCGGCGTTCAACCCGGACGACGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q747Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.596
  ssb Neisseria meningitidis MC58

45.665

100

0.541
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.541
  ssb Glaesserella parasuis strain SC1401

42.222

100

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

32.749

100

0.384

Multiple sequence alignment