Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AM329_RS16450 Genome accession   NZ_CP018814
Coordinates   3312367..3312891 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter cloacae complex sp. AR_0002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3307367..3317891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM329_RS16425 (AM329_15910) soxR 3307459..3307917 (-) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  AM329_RS16430 (AM329_15915) soxS 3308016..3308342 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  AM329_RS16435 (AM329_15920) - 3308349..3309914 (-) 1566 WP_032608248.1 EAL domain-containing protein -
  AM329_RS16440 (AM329_15925) - 3310180..3311580 (-) 1401 WP_003860281.1 sensor domain-containing diguanylate cyclase -
  AM329_RS16445 (AM329_15930) - 3312024..3312305 (+) 282 WP_003860282.1 YjcB family protein -
  AM329_RS16450 (AM329_15935) ssb 3312367..3312891 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AM329_RS16455 (AM329_15940) uvrA 3313143..3315965 (+) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  AM329_RS16460 (AM329_15945) - 3315969..3316322 (-) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  AM329_RS16465 (AM329_15950) - 3316325..3316741 (-) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AM329_RS16470 (AM329_15955) aphA 3316854..3317567 (-) 714 WP_003860292.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=210555 AM329_RS16450 WP_003860284.1 3312367..3312891(-) (ssb) [Enterobacter cloacae complex sp. AR_0002]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=210555 AM329_RS16450 WP_003860284.1 3312367..3312891(-) (ssb) [Enterobacter cloacae complex sp. AR_0002]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGCGAGTATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment