Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | BTV21_RS09370 | Genome accession | NZ_CP018808 |
| Coordinates | 2057169..2057504 (+) | Length | 111 a.a. |
| NCBI ID | WP_012341067.1 | Uniprot ID | A0A9Q7E5D2 |
| Organism | Histophilus somni strain USDA-ARS-USMARC-63374 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2052169..2062504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BTV21_RS09345 (BTV21_09340) | - | 2053494..2053973 (-) | 480 | WP_011608283.1 | Dps family protein | - |
| BTV21_RS09350 (BTV21_09345) | - | 2054126..2054695 (-) | 570 | WP_075293539.1 | anthranilate synthase component II | - |
| BTV21_RS09355 (BTV21_09350) | - | 2054752..2055759 (+) | 1008 | WP_075293540.1 | aminodeoxychorismate synthase component I | - |
| BTV21_RS09360 (BTV21_09355) | - | 2055908..2056489 (+) | 582 | WP_075293541.1 | aminotransferase class IV family protein | - |
| BTV21_RS09365 (BTV21_09360) | - | 2056550..2056939 (+) | 390 | WP_087437229.1 | RidA family protein | - |
| BTV21_RS09370 (BTV21_09365) | comE1/comEA | 2057169..2057504 (+) | 336 | WP_012341067.1 | ComEA family DNA-binding protein | Machinery gene |
| BTV21_RS09375 (BTV21_09370) | rdgB | 2057694..2058290 (+) | 597 | WP_075293543.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| BTV21_RS09380 (BTV21_09375) | hemW | 2058290..2059468 (+) | 1179 | WP_075293544.1 | radical SAM family heme chaperone HemW | - |
| BTV21_RS09385 (BTV21_09380) | rpiA | 2059564..2060223 (+) | 660 | WP_075293545.1 | ribose-5-phosphate isomerase RpiA | - |
| BTV21_RS09390 (BTV21_09385) | serA | 2060249..2061481 (+) | 1233 | WP_075293546.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12138.14 Da Isoelectric Point: 10.2041
>NTDB_id=210513 BTV21_RS09370 WP_012341067.1 2057169..2057504(+) (comE1/comEA) [Histophilus somni strain USDA-ARS-USMARC-63374]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
Nucleotide
Download Length: 336 bp
>NTDB_id=210513 BTV21_RS09370 WP_012341067.1 2057169..2057504(+) (comE1/comEA) [Histophilus somni strain USDA-ARS-USMARC-63374]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGGGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGGGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60.36 |
100 |
0.604 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.333 |
100 |
0.577 |
| comEA | Vibrio cholerae C6706 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio cholerae strain A1552 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio campbellii strain DS40M4 |
43.269 |
93.694 |
0.405 |