Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | BTV22_RS08950 | Genome accession | NZ_CP018807 |
| Coordinates | 1983942..1984277 (+) | Length | 111 a.a. |
| NCBI ID | WP_012341067.1 | Uniprot ID | A0A9Q7E5D2 |
| Organism | Histophilus somni strain USDA-ARS-USMARC-63373 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1978942..1989277
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BTV22_RS08925 (BTV22_08895) | - | 1980267..1980746 (-) | 480 | WP_011608283.1 | Dps family protein | - |
| BTV22_RS08930 (BTV22_08900) | - | 1980899..1981468 (-) | 570 | WP_075293539.1 | anthranilate synthase component II | - |
| BTV22_RS08935 (BTV22_08905) | - | 1981525..1982532 (+) | 1008 | WP_075293540.1 | aminodeoxychorismate synthase component I | - |
| BTV22_RS08940 (BTV22_08910) | - | 1982681..1983262 (+) | 582 | WP_075293541.1 | aminotransferase class IV family protein | - |
| BTV22_RS08945 (BTV22_08915) | - | 1983323..1983712 (+) | 390 | WP_075293542.1 | RidA family protein | - |
| BTV22_RS08950 (BTV22_08920) | comE1/comEA | 1983942..1984277 (+) | 336 | WP_012341067.1 | ComEA family DNA-binding protein | Machinery gene |
| BTV22_RS08955 (BTV22_08925) | rdgB | 1984467..1985063 (+) | 597 | WP_075293543.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| BTV22_RS08960 (BTV22_08930) | hemW | 1985063..1986241 (+) | 1179 | WP_075293544.1 | radical SAM family heme chaperone HemW | - |
| BTV22_RS08965 (BTV22_08935) | rpiA | 1986337..1986996 (+) | 660 | WP_075293545.1 | ribose-5-phosphate isomerase RpiA | - |
| BTV22_RS08970 (BTV22_08940) | serA | 1987022..1988254 (+) | 1233 | WP_075293546.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12138.14 Da Isoelectric Point: 10.2041
>NTDB_id=210487 BTV22_RS08950 WP_012341067.1 1983942..1984277(+) (comE1/comEA) [Histophilus somni strain USDA-ARS-USMARC-63373]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
Nucleotide
Download Length: 336 bp
>NTDB_id=210487 BTV22_RS08950 WP_012341067.1 1983942..1984277(+) (comE1/comEA) [Histophilus somni strain USDA-ARS-USMARC-63373]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGGGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGGGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60.36 |
100 |
0.604 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.333 |
100 |
0.577 |
| comEA | Vibrio cholerae C6706 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio cholerae strain A1552 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio campbellii strain DS40M4 |
43.269 |
93.694 |
0.405 |