Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BTV18_RS01780 Genome accession   NZ_CP018802
Coordinates   346837..348366 (-) Length   509 a.a.
NCBI ID   WP_075293636.1    Uniprot ID   A0A9Q6Z1G7
Organism   Histophilus somni strain USDA-ARS-USMARC-63250     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 341837..353366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV18_RS01745 (BTV18_01730) - 341875..342717 (-) 843 WP_075293640.1 metal ABC transporter permease -
  BTV18_RS01750 (BTV18_01735) - 342710..343600 (-) 891 WP_075293639.1 metal ABC transporter permease -
  BTV18_RS01755 (BTV18_01740) - 343605..344363 (-) 759 WP_011608481.1 metal ABC transporter ATP-binding protein -
  BTV18_RS01760 (BTV18_01745) - 344373..345254 (-) 882 WP_012341045.1 metal ABC transporter substrate-binding protein -
  BTV18_RS01765 (BTV18_01750) - 345360..345689 (-) 330 WP_075293638.1 TusE/DsrC/DsvC family sulfur relay protein -
  BTV18_RS01770 (BTV18_01755) - 345767..346429 (-) 663 WP_075293637.1 Bax inhibitor-1/YccA family protein -
  BTV18_RS01780 (BTV18_01765) comM 346837..348366 (-) 1530 WP_075293636.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BTV18_RS01785 (BTV18_01770) yihA 348468..349082 (-) 615 WP_087437236.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  BTV18_RS01790 (BTV18_01775) glmU 349084..350445 (-) 1362 WP_075293634.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BTV18_RS01795 (BTV18_01780) - 350548..351669 (+) 1122 WP_041605195.1 anhydro-N-acetylmuramic acid kinase -
  BTV18_RS01800 (BTV18_01785) murQ 351672..352583 (+) 912 WP_012341077.1 N-acetylmuramic acid 6-phosphate etherase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55796.98 Da        Isoelectric Point: 9.4365

>NTDB_id=210343 BTV18_RS01780 WP_075293636.1 346837..348366(-) (comM) [Histophilus somni strain USDA-ARS-USMARC-63250]
MSLAVVYSRASMGVQAPLVTIEVHLSNGKPAFTLVGLPEKTVTEAQGRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQINAKKLQQFEFVAELALTGELRGVHGVIPAILAGQKSKRQLIVAQQNANEASLVSQQETFFARNL
LEVVQFLNDDSSLPSSTTLCMQSAVDFSPQSNKDLTDIIGQQHAKRALMIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
DMTDQEAIETASVTSLVQNELNFQNWKQRPFRAPHHSASSPALVGGGTIPKPGEISLAHNGVLFLDELPEFERRVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGIHNRTSPQQVLRYLNRLSGPFLDRFDLSIEVPLLPQGALQN
TEDRGETTAQVKEKVLRVREIQLARAGKVNAYLTGKEIERDCKLTEQDALFLENTLTRLGLSVRAYHRILKVARTIADLN
GDSDIKQNHLAEALSYRAMDRLLRKLSDQ

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=210343 BTV18_RS01780 WP_075293636.1 346837..348366(-) (comM) [Histophilus somni strain USDA-ARS-USMARC-63250]
ATGTCATTAGCAGTTGTTTATAGTCGAGCATCAATGGGCGTACAAGCACCTTTGGTGACAATTGAAGTTCACTTGAGTAA
TGGAAAACCTGCTTTTACCCTCGTTGGATTGCCGGAAAAAACAGTAACTGAAGCACAAGGACGAGTACGTAGTGCATTAC
TAAATGCTCAATTCAAATACCCTGCAAAACGCATTACAGTTAATCTTGCACCGGCAGATTTACCAAAAGAAGGCGGGCGT
TTCGATCTGCCTATTGCACTCGGTATTTTAGCGGCTTCAGAACAGATTAATGCAAAAAAATTACAGCAATTTGAATTTGT
TGCAGAGTTAGCTCTAACAGGTGAACTAAGAGGCGTACACGGTGTCATTCCTGCTATTTTGGCAGGGCAAAAATCTAAAC
GACAACTTATTGTTGCACAACAAAATGCTAATGAAGCCTCTTTAGTTTCGCAACAGGAAACATTTTTTGCACGGAACTTA
TTGGAGGTCGTACAATTCCTGAATGACGACAGTTCGCTACCTTCATCCACAACGTTATGTATGCAAAGTGCGGTAGATTT
TTCACCTCAATCTAATAAAGATCTGACGGATATTATTGGTCAACAACATGCTAAACGAGCCTTAATGATTGCAGCTGCCG
GACAACATAATTTGTTGTTTCTCGGACCGCCCGGCACAGGTAAAACCATGTTAGCAAGCCGTTTAACTGGCTTGCTACCG
GATATGACAGATCAAGAGGCAATAGAAACCGCCTCTGTAACAAGTTTAGTACAAAACGAATTAAATTTTCAAAATTGGAA
ACAACGTCCTTTTCGTGCACCTCATCATAGTGCCTCATCACCGGCATTGGTCGGAGGAGGAACAATTCCGAAACCGGGAG
AAATTTCTTTGGCTCATAACGGTGTATTATTTTTAGACGAGTTACCCGAATTTGAACGGAGAGTGCTGGATGCTTTACGC
CAGCCTTTAGAAAGCGGAGAAATAATTATTTCACGTGCGAATGCAAAAATTCAGTTTCCGGCACGTTTTCAATTAGTGGC
TGCGATGAATCCAAGTCCAACGGGACATTATACCGGTATACACAACCGCACTTCACCACAACAAGTGTTGCGTTATTTGA
ACAGACTTTCCGGTCCTTTTTTAGATCGCTTTGATCTTTCCATCGAAGTGCCTTTACTTCCACAAGGTGCTTTGCAAAAT
ACCGAAGATCGAGGTGAAACAACAGCACAAGTTAAAGAAAAAGTATTAAGGGTCAGAGAAATTCAGCTAGCTAGAGCCGG
AAAAGTCAATGCTTATTTAACCGGTAAAGAAATTGAGCGAGATTGCAAGTTGACTGAGCAAGATGCACTATTTTTAGAAA
ATACTTTAACCAGACTCGGTTTATCTGTTCGTGCTTATCATCGAATTTTAAAAGTTGCACGCACTATCGCTGATTTAAAC
GGAGATTCTGATATCAAACAAAACCACTTAGCTGAAGCATTAAGCTATCGAGCCATGGATCGTTTGCTACGGAAACTATC
AGACCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.449

99.804

0.843
  comM Glaesserella parasuis strain SC1401

76.134

99.607

0.758
  comM Vibrio cholerae strain A1552

65.422

100

0.654
  comM Vibrio campbellii strain DS40M4

64.217

100

0.652
  comM Legionella pneumophila str. Paris

51.287

99.214

0.509
  comM Legionella pneumophila strain ERS1305867

51.287

99.214

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.631

100

0.462

Multiple sequence alignment