Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BUE86_RS15075 Genome accession   NZ_CP018785
Coordinates   3143240..3144760 (-) Length   506 a.a.
NCBI ID   WP_079231573.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain AA4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3138240..3149760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUE86_RS15065 hdfR 3141934..3142755 (-) 822 WP_079231572.1 HTH-type transcriptional regulator HdfR -
  BUE86_RS15070 - 3142874..3143212 (+) 339 WP_014172168.1 DUF413 domain-containing protein -
  BUE86_RS15075 comM 3143240..3144760 (-) 1521 WP_079231573.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BUE86_RS15080 ilvL 3145100..3145198 (+) 99 WP_001311244.1 ilv operon leader peptide -
  BUE86_RS23370 ilvX 3145285..3145335 (+) 51 WP_102046757.1 peptide IlvX -
  BUE86_RS15085 ilvG 3145338..3146984 (+) 1647 WP_079231574.1 acetolactate synthase 2 catalytic subunit -
  BUE86_RS15090 ilvM 3146981..3147244 (+) 264 WP_014172166.1 acetolactate synthase 2 small subunit -
  BUE86_RS15095 ilvE 3147263..3148192 (+) 930 WP_020882898.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55089.08 Da        Isoelectric Point: 7.3481

>NTDB_id=210167 BUE86_RS15075 WP_079231573.1 3143240..3144760(-) (comM) [Enterobacter ludwigii strain AA4]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNSSRLGAYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENGAEVSLIAERGCLLAGHL
QEVCAYLEGQHVLSEPEESGDPLAESPDDLSDIYGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSVSLQKQWRRRQFRSPHHSASLAAMVGGGTIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPSGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSARG
ESTVEVRERVIAAQARQYMRQHKLNARLDNAEIRQFCPLKTEDSCWLEDTLTRFGLSIRAWQRLIKVARTIADVEKCPDI
ERRHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=210167 BUE86_RS15075 WP_079231573.1 3143240..3144760(-) (comM) [Enterobacter ludwigii strain AA4]
ATGTCACTGTCAGTTGTTTATACCCGAGCGGCCATTGGAGTAAAAGCACCGCTTATTTCGGTAGAAGTTCATCTCAGCAA
CGGGCTGCCCGGGCTGACGCTGGTTGGATTGCCGGAGACCACGGTAAAGGAAGCCAGAGATCGGGTGCGCAGTGCGATTA
TTAATAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAACCTTGCGCCTGCAGACTTGCCTAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATAGCGCTCCTCGCCGCCTCTGAGCAGCTTAACAGCAGCAGACTAGGCGCATATGAGTTCAT
CGGTGAACTGGCGCTCACAGGCGCGCTGAGGGGCGTTCCTGGTGCCATCTCGGGTGCGCTGGAGGCTATTCGCGCAGGTC
GACAAATCATTGTTGCCAATGAAAATGGTGCAGAAGTGAGCCTGATAGCCGAGAGAGGATGTCTGCTAGCCGGGCATTTA
CAGGAAGTGTGCGCGTATCTTGAGGGGCAACATGTGCTGTCAGAGCCGGAAGAATCAGGCGATCCCCTGGCAGAAAGCCC
GGACGATCTGAGCGATATTTACGGCCAGGAGCAGGGGAAGCGGGCGCTGGAGATCACCGCTGCCGGCGGACATAACCTGT
TGCTGATTGGCCCACCGGGTACAGGAAAAACGATGCTGGCGAGCAGGTTGAATGGTTTACTGCCTCCACTTAATAACCAT
GAAGCGCTGGAAAGCGCGGCGATATTTAGTCTGGTGAGTTCAGTGTCATTGCAAAAACAGTGGCGACGTCGCCAGTTTCG
CTCTCCGCACCACAGTGCCTCACTGGCGGCCATGGTCGGCGGTGGCACCATACCAGGGCCGGGAGAGATCTCTCTGGCGC
ACAACGGCATCCTGTTTCTGGATGAACTGCCTGAATTTGAACGCCGCGTTCTGGATGCGCTGAGGGAGCCCATCGAATCG
GGTGAGATCCACATCTCCCGTACACGCGCCAAAATAAGCTATCCCGCGCGGTTCCAGCTGGTAGCGGCAATGAACCCCAG
CCCATCGGGCCATTATCAGGGAAACCACAATCGCTCCACGCCTGAACAGACGCTGCGCTACCTGGGGAAGTTATCTGGTC
CTTTCCTGGATCGTTTCGATTTGTCGCTGGAAATCCCCTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGCGCCAGAGGA
GAGAGTACGGTGGAGGTTCGCGAGCGGGTTATCGCCGCGCAGGCCCGGCAGTATATGCGTCAACATAAGCTGAATGCCCG
TCTGGATAACGCTGAGATTCGGCAGTTTTGTCCTCTTAAGACTGAAGATTCATGCTGGCTGGAGGATACGTTGACGCGCT
TTGGGCTTTCCATTCGCGCATGGCAGCGTCTTATAAAAGTCGCCCGCACCATCGCCGATGTGGAAAAGTGCCCTGACATT
GAGAGGCGGCATCTGCAGGAAGCGTTAAGCTATCGTGCGATCGATCGCTTGCTCCTGCACCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.96

99.209

0.595
  comM Vibrio campbellii strain DS40M4

59.325

99.605

0.591
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Haemophilus influenzae Rd KW20

57.564

100

0.579
  comM Legionella pneumophila str. Paris

49.296

98.221

0.484
  comM Legionella pneumophila strain ERS1305867

49.296

98.221

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.393

100

0.435

Multiple sequence alignment